myRT

myRT report for GCA_000599745.2_a5_miseq_linux_20140113

Download annotations/find similar RTs

Seq: JFFK01000083.1 Escherichia coli strain UCD_JA17 contig_83, whole genome shotgun sequence (27309 bp)
Overview 1 RT 1: 2340-5916 bp Neighborhood of RT #1 [2340, 6011] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_3 Feature: gene Location: 2340-2642 bp Feature: domain Description: InsE Location: 2349-2631 bp Feature: domain Description: InsE Location: 2349-2631 bp Feature: gene Location: 2855-3094 bp Feature: domain Description: PHA02517 Location: 2858-3029 bp Feature: domain Description: PHA0251 7 Location: 2858-3029 bp Feature: gene Location: 3686-5209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959-4691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959-4691 bp Feature: domain Description: GIIM Note: maturase Location: 4766-4964 bp Feature: domain Description: GIIM Note: maturase Location: 4766-4964 bp Feature: gene Location: 5374-5778 bp Feature: domain Description: PHA02517 Location: 5377-5758 bp Feature: domain Description: PHA0251 7 Location: 5377-5758 bp Feature: gene Location: 5793-6011 bp Feature: domain Description: DDE_3 Location: 5814-5916 bp Feature: domain Description: DDE_3 Location: 581 4-591 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)