myRT

myRT report for GCA_000599905.1_KPB_4_IHQD

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Seq: AQPG01000011.1 Klebsiella pneumoniae Kb677 KPB2.Contig513, whole genome shotgun sequence (174491 bp)
Overview 1 RT 1: 1756-6192 bp 2 RT 2: 87960-92233 bp Neighborhood of RT #1 [1756, 6200] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Neighborhood of RT #2 [87960, 92233] umuC PRK10276 RVT-GII Feature: gene Location: 1756-2133 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1759-2131 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 759-21 31 bp Feature: gene Location: 2178-2453 bp Feature: domain Description: InsA Location: 2184-2445 bp Feature: domain Description: InsA Location: 21 84-2445 bp Feature: gene Location: 2605-4092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3010-3700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 0-3700 bp Feature: gene Location: 4498-4929 bp Feature: domain Description: PRK10276 Location: 4549-4912 bp Feature: domain Description: PRK1 0276 Location: 4549-491 2 bp Feature: gene Location: 4929-6200 bp Feature: domain Description: umuC Location: 4932-6192 bp Feature: domain Description: umuC Location: 4932-61 92 bp Feature: gene Location: 87960-89231 bp Feature: domain Description: umuC Location: 87963-89226 bp Feature: domain Description: umuC Location: 87963-89226 bp Feature: gene Location: 89231-89656 bp Feature: domain Description: PRK10276 Location: 89234-89642 bp Feature: domain Description: PRK1 0276 Location: 89234-89642 bp Feature: gene Location: 90059-91546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90464-91154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90464-91 1 54 bp Feature: gene Location: 91780-92010 bp Feature: gene Location: 92075-92233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: AQPG01000012.1 Klebsiella pneumoniae Kb677 KPB2.Contig514, whole genome shotgun sequence (5370770 bp)
Overview 1 RT 1: 1830174-1833581 bp 2 RT 2: 2279372-2285843 bp 3 RT 3: 3596427-3602145 bp 4 RT 4: 3686035-3691399 bp 5 RT 5: 3786572-3791093 bp 6 RT 6: 4029515-4035126 bp Neighborhood of RT #1 [1830174, 1833655] RVT-GII Terminase_2 Neighborhood of RT #2 [2279372, 2285857] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3596427, 3602150] LexA_DNA_bind PRK10597 RVT-GII DUF4209 HTH_ICLR PerC Neighborhood of RT #4 [3686035, 3691455] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3786572, 3791095] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #6 [4029515, 4035146] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1830174-1830413 bp Feature: gene Location: 1830413-1830751 bp Feature: gene Location: 1830848-1832332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831250-1831940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18312 50-1831940 bp Feature: gene Location: 1832736-1832993 bp Feature: gene Location: 1833071-1833655 bp Feature: domain Description: Terminase_2 Location: 1833116-1833581 bp Feature: domain Description: Terminase_2 Location: 1833116-1833581 bp Feature: gene Location: 2279372-2280796 bp Feature: domain Description: SbcB Location: 2279378-2280794 bp Feature: domain Description: SbcB Location: 2 2 79378-2 2 80794 bp Feature: gene Location: 2280977-2282140 bp Feature: domain Description: dacD Location: 2280980-2282135 bp Feature: domain Description: dacD Location: 2 2 80980-2 2 82 135 bp Feature: gene Location: 2282661-2284145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2283063-2283753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 83063-2 2 83753 bp Feature: gene Location: 2284227-2284700 bp Feature: domain Description: PRK10016 Location: 2284230-2284689 bp Feature: domain Description: PRK10016 Location: 2 2 842 30-2 2 84689 bp Feature: gene Location: 2284799-2285857 bp Feature: domain Description: YccC Location: 2284805-2285843 bp Feature: domain Description: YccC Location: 2 2 84805-2 2 85843 bp Feature: gene Location: 3596427-3596819 bp Feature: domain Description: LexA_DNA_bind Location: 3596505-3596694 bp Feature: domain Description: LexA_DNA_bind Location: 3596505-3596694 bp Feature: gene Location: 3597162-3597395 bp Feature: domain Description: PRK10597 Location: 3597165-3597390 bp Feature: domain Description: PRK10597 Location: 3597165-3597390 bp Feature: gene Location: 3597474-3598958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3597876-3598566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3597876-3598566 bp Feature: gene Location: 3599717-3601504 bp Feature: domain Description: DUF4209 Location: 3601169-3601439 bp Feature: domain Description: DUF42 09 Location: 3601169-3601439 bp Feature: gene Location: 3601713-3602150 bp Feature: domain Description: HTH_ICLR Location: 3601737-3601893 bp Feature: domain Description: HTH_ICLR Location: 3601737-3601893 bp Feature: domain Description: PerC Location: 3602010-3602145 bp Feature: domain Description: PerC Location: 3602 010-3602 145 bp Feature: gene Location: 3686035-3687300 bp Feature: domain Description: umuC Location: 3686038-3687298 bp Feature: domain Description: umuC Location: 3686038-36872 98 bp Feature: gene Location: 3687303-3687722 bp Feature: domain Description: PRK10276 Location: 3687306-3687717 bp Feature: domain Description: PRK102 76 Location: 3687306-3687717 bp Feature: gene Location: 3687801-3689285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3688203-3688893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36882 03-3688893 bp Feature: gene Location: 3689903-3690145 bp Feature: domain Description: DinI Location: 3689954-3690134 bp Feature: domain Description: DinI Location: 3689954-3690134 bp Feature: gene Location: 3690316-3691455 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3690499-3691399 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3690499-3691399 bp Feature: gene Location: 3786572-3787132 bp Feature: domain Description: PRK10598 Location: 3786575-3787130 bp Feature: domain Description: PRK10598 Location: 3786575-3787130 bp Feature: gene Location: 3787258-3788304 bp Feature: domain Description: PRK05451 Location: 3787273-3788299 bp Feature: domain Description: PRK05451 Location: 37872 73-37882 99 bp Feature: gene Location: 3788397-3789881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788799-3789489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788799-3789489 bp Feature: gene Location: 3790287-3790538 bp Feature: domain Description: PRK10597 Location: 3790290-3790527 bp Feature: domain Description: PRK10597 Location: 37902 90-379052 7 bp Feature: gene Location: 3790841-3791095 bp Feature: domain Description: bssS Location: 3790844-3791093 bp Feature: domain Description: bssS Location: 3790844-3791093 bp Feature: gene Location: 4029515-4030450 bp Feature: domain Description: Phage_CI_repr Location: 4029599-4029782 bp Feature: domain Description: Phage_CI_repr Location: 402 9599-402 9782 bp Feature: domain Description: Phage_CI_repr Location: 4029911-4030103 bp Feature: domain Description: Phage_CI_repr Location: 402 9911-4030103 bp Feature: domain Description: Phage_CI_C Location: 4030130-4030424 bp Feature: domain Description: Phage_CI_C Location: 4030130-403042 4 bp Feature: gene Location: 4030462-4031406 bp Feature: gene Location: 4031505-4032989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4031907-4032597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4031907-4032 597 bp Feature: gene Location: 4033408-4034460 bp Feature: domain Description: int Location: 4033411-4034410 bp Feature: domain Description: int Location: 4033411-4034410 bp Feature: gene Location: 4034583-4035146 bp Feature: domain Description: YbjK Location: 4034589-4035126 bp Feature: domain Description: YbjK Location: 4034589-403512 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Terminase_2 (pfam03592), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional), DUF4209 (pfam13910), HTH_ICLR (smart00346)
PerC (pfam06069), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), bssS (PRK12301), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)