myRT

myRT report for GCA_000601075.2_ASM60107v2

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Seq: JGVE01000079.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.83, whole genome shotgun sequence (166563 bp)
Overview 1 RT 1: 97318-106276 bp Neighborhood of RT #1 [97318, 106284] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 97318-99507 bp Ori: EYE56809.1 Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: gene Location: 99810-101966 bp Feature: gene Location: 102173-103285 bp Ori: EYE56811.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102488-103037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 02488-1 03037 bp Feature: gene Location: 103427-105220 bp Ori: EYE56812.1 Feature: domain Description: rpsA Location: 103505-105113 bp Feature: domain Description: rpsA Location: 1 03505-1 051 1 3 bp Feature: gene Location: 105370-106284 bp Ori: EYE56813.1 Gene: rnz Feature: domain Description: RNase_Z Location: 105385-106276 bp Feature: domain Description: RNase_Z Location: 1 05385-1 06276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGVE01000101.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.105, whole genome shotgun sequence (31446 bp)
Overview 1 RT 1: 4389-11075 bp Neighborhood of RT #1 [4389, 11113] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 BioF Feature: gene Location: 4389-4799 bp Ori: EYE53240.1 Feature: domain Description: Cas_Cmr5 Location: 4437-4683 bp Feature: domain Description: Cas_Cmr5 Location: 4437-4683 bp Feature: gene Location: 4802-5746 bp Ori: EYE53241.1 Feature: domain Description: Cmr6_III-B Location: 4958-5735 bp Feature: domain Description: Cmr6_III-B Location: 4958-5735 bp Feature: gene Location: 5766-8036 bp Ori: EYE53242.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5973-6579 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5973-6579 bp Feature: domain Description: Cas1_I-II-III Location: 7038-7995 bp Feature: domain Description: Cas1_I-II-III Location: 7038-7995 bp Feature: gene Location: 9432-9650 bp Ori: EYE53243.1 Feature: domain Description: DUF772 Location: 9474-9642 bp Feature: domain Description: DUF772 Location: 9474-9642 bp Feature: gene Location: 9929-11113 bp Ori: EYE53244.1 Gene: spt Feature: domain Description: BioF Location: 9968-11075 bp Feature: domain Description: BioF Location: 9968-11075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598), BioF (COG0156)

Seq: JGVE01000095.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.99, whole genome shotgun sequence (559073 bp)
Overview 1 RT 1: 61773-66360 bp 2 RT 2: 89178-96935 bp Neighborhood of RT #1 [61773, 66374] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Neighborhood of RT #2 [89178, 96935] PRK06917 N6_Mtase COG4646 RVT_N RVT-GII GIIM TssC Feature: gene Location: 61773-62144 bp Feature: gene Location: 62199-63542 bp Ori: EYE54106.1 Feature: domain Description: MPTase-PolyVal Location: 62496-62808 bp Feature: domain Description: MPTase-PolyVal Location: 62496-62808 bp Feature: gene Location: 63805-65610 bp Ori: EYE54107.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64069-64891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64069-64891 bp Feature: domain Description: Intron_maturas2 Location: 65065-65290 bp Feature: domain Description: Intron_maturas2 Location: 65065-65290 bp Feature: gene Location: 65794-65946 bp Feature: gene Location: 66156-66374 bp Ori: EYE54109.1 Feature: domain Description: DUF1738 Location: 66210-66360 bp Feature: domain Description: DUF173 8 Location: 66210-663 60 bp Feature: gene Location: 89178-93215 bp Ori: EYE54141.1 Feature: domain Description: PRK06917 Location: 89217-89439 bp Feature: domain Description: PRK06917 Location: 89217-8943 9 bp Feature: domain Description: N6_Mtase Location: 89670-90084 bp Feature: domain Description: N6_Mtase Location: 89670-90084 bp Feature: domain Description: COG4646 Location: 90867-92598 bp Feature: domain Description: COG4646 Location: 90867-92598 bp Feature: gene Location: 93615-93731 bp Feature: gene Location: 93873-95417 bp Ori: EYE54143.1 Feature: domain Description: RVT_N Location: 93927-94170 bp Feature: domain Description: RVT_N Location: 93 927-94170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94215-94863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94215-94863 bp Feature: domain Description: GIIM Note: maturase Location: 94917-95148 bp Feature: domain Description: GIIM Note: maturase Location: 94917-95148 bp Feature: gene Location: 95450-96208 bp Ori: EYE54144.1 Feature: domain Description: TssC Location: 95453-96203 bp Feature: domain Description: TssC Location: 95453 -96203 bp Feature: gene Location: 96321-96935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), PRK06917 (aspartate aminotransferase family protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), GIIM (pfam08388), TssC