myRT

myRT report for GCA_000601115.1_ASM60111v1

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Seq: JGVG01000006.1 Bacteroides fragilis str. 3986 N3 gbf3986N3.contig.5, whole genome shotgun sequence (275249 bp)
Overview 1 RT 1: 101768-110726 bp 2 RT 2: 246980-249836 bp Neighborhood of RT #1 [101768, 110734] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [246980, 249904] RVT-Retrons COG3943 Feature: gene Location: 101768-103957 bp Ori: EYE69563.1 Feature: domain Description: GlnA3 Location: 101843-103955 bp Feature: domain Description: GlnA3 Location: 1 01 843-1 03955 bp Feature: gene Location: 104260-106416 bp Feature: gene Location: 106623-107735 bp Ori: EYE69565.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106938-107487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 06938-1 07487 bp Feature: gene Location: 107877-109670 bp Ori: EYE69566.1 Feature: domain Description: rpsA Location: 107955-109563 bp Feature: domain Description: rpsA Location: 1 07955-1 09563 bp Feature: gene Location: 109820-110734 bp Ori: EYE69567.1 Gene: rnz Feature: domain Description: RNase_Z Location: 109835-110726 bp Feature: domain Description: RNase_Z Location: 1 09835-1 1 0726 bp Feature: gene Location: 246980-247114 bp Feature: gene Location: 247263-247478 bp Feature: gene Location: 247504-248361 bp Ori: EYE69683.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-248191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-2481 91 bp Feature: gene Location: 248392-249273 bp Feature: gene Location: 249539-249904 bp Ori: EYE69685.1 Feature: domain Description: COG3943 Location: 249578-249836 bp Feature: domain Description: COG3943 Location: 249578-249836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), COG3943 (Uncharacterized conserved protein )

Seq: JGVG01000009.1 Bacteroides fragilis str. 3986 N3 gbf3986N3.contig.8, whole genome shotgun sequence (1383888 bp)
Overview 1 RT 1: 1009796-1015406 bp Neighborhood of RT #1 [1009796, 1015414] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 Feature: gene Location: 1009796-1010206 bp Ori: EYE68504.1 Feature: domain Description: Cas_Cmr5 Location: 1009844-1010090 bp Feature: domain Description: Cas_Cmr5 Location: 1009844-1010090 bp Feature: gene Location: 1010209-1011153 bp Ori: EYE68505.1 Feature: domain Description: Cmr6_III-B Location: 1010365-1011142 bp Feature: domain Description: Cmr6_III-B Location: 1010365-1011142 bp Feature: gene Location: 1011173-1013443 bp Ori: EYE68506.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1011380-1011986 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1011380-1011986 bp Feature: domain Description: Cas1_I-II-III Location: 1012445-1013402 bp Feature: domain Description: Cas1_I-II-III Location: 1012 445-1013402 bp Feature: gene Location: 1014829-1015071 bp Feature: gene Location: 1015196-1015414 bp Ori: EYE68508.1 Feature: domain Description: DUF772 Location: 1015238-1015406 bp Feature: domain Description: DUF772 Location: 10152 38-1015406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598)

Seq: JGVG01000021.1 Bacteroides fragilis str. 3986 N3 gbf3986N3.contig.20, whole genome shotgun sequence (215597 bp)
Overview 1 RT 1: 147986-151635 bp Neighborhood of RT #1 [147986, 151635] RVT-DGRs Feature: gene Location: 147986-148366 bp Feature: gene Location: 148363-148791 bp Feature: gene Location: 148754-149941 bp Ori: EYE64885.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149087-149714 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149087-149714 bp Feature: gene Location: 150063-150200 bp Feature: gene Location: 150274-151635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs