myRT

myRT report for GCA_000601155.1_ASM60115v1

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Seq: JHDN01000131.1 Escherichia coli 1-110-08_S3_C1 e111008S3C1.contig.131_1, whole genome shotgun sequence (2008 bp)
Overview 1 RT 1: 1-1767 bp Neighborhood of RT #1 [1, 1937] RVT-GII DDE_Tnp_IS66 COG3436 Feature: gene Location: 1-478 bp Ori: EYE14290.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-478 bp Feature: gene Location: 877-1281 bp Ori: EYE14291.1 Feature: domain Description: DDE_Tnp_IS66 Location: 895-1144 bp Feature: domain Description: DDE_Tnp_IS66 Location: 895-1 1 44 bp Feature: gene Location: 1263-1937 bp Ori: EYE14292.1 Feature: domain Description: COG3436 Location: 1287-1767 bp Feature: domain Description: COG3436 Location: 1 287-1 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase )

Seq: JHDN01000106.1 Escherichia coli 1-110-08_S3_C1 e111008S3C1.contig.106_1, whole genome shotgun sequence (14805 bp)
Overview 1 RT 1: 10412-14124 bp Neighborhood of RT #1 [10412, 14198] IS5 GT4_PimA-like RVT-GII GIIM Feature: gene Location: 10412-11392 bp Ori: EYE15360.1 Feature: domain Description: IS5 Location: 10601-11378 bp Feature: domain Description: IS5 Location: 10601-11378 bp Feature: gene Location: 11898-12614 bp Ori: EYE15361.1 Feature: domain Description: GT4_PimA-like Location: 12141-12609 bp Feature: domain Description: GT4_PimA-like Location: 12 141-12 609 bp Feature: gene Location: 13071-14198 bp Ori: EYE15362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13167-13821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13167-1382 1 bp Feature: domain Description: GIIM Note: maturase Location: 13899-14124 bp Feature: domain Description: GIIM Note: maturase Location: 13899-1412 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), GT4_PimA-like (cd03801), RVT-GII, GIIM (pfam08388)

Seq: JHDN01000062.1 Escherichia coli 1-110-08_S3_C1 e111008S3C1.contig.61_1, whole genome shotgun sequence (9300 bp)
Overview 1 RT 1: 118-2489 bp Neighborhood of RT #1 [118, 2491] DDE_Tnp_1 RVT-GII PHA02517 Feature: gene Location: 118-378 bp Ori: EYE21966.1 Feature: domain Description: DDE_Tnp_1 Location: 124-310 bp Feature: domain Description: DDE_Tnp_1 Location: 124-3 10 bp Feature: gene Location: 1100-1600 bp Ori: EYE21967.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1106-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1106-1415 bp Feature: gene Location: 1581-1928 bp Feature: gene Location: 2105-2491 bp Ori: EYE21969.1 Feature: domain Description: PHA02517 Location: 2108-2489 bp Feature: domain Description: PHA02517 Location: 2108-2489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: JHDN01000090.1 Escherichia coli 1-110-08_S3_C1 e111008S3C1.contig.90_1, whole genome shotgun sequence (2135 bp)
Overview 1 RT 1: 1-2098 bp Neighborhood of RT #1 [1, 2118] RVT-GII DDE_Tnp_IS66 COG3436 Feature: gene Location: 1-478 bp Ori: EYE17094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-4 78 bp Feature: gene Location: 877-1596 bp Ori: EYE17095.1 Feature: domain Description: DDE_Tnp_IS66 Location: 886-1456 bp Feature: domain Description: DDE_Tnp_IS66 Location: 886-14 56 bp Feature: gene Location: 1681-2118 bp Ori: EYE17096.1 Feature: domain Description: COG3436 Location: 1759-2098 bp Feature: domain Description: COG34 36 Location: 1759-2098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase )