myRT

myRT report for GCA_000601175.1_ASM60117v1

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Seq: JHDM01000136.1 Escherichia coli 1-110-08_S3_C2 e111008S3C2.contig.135_1, whole genome shotgun sequence (15282 bp)
Overview 1 RT 1: 767-6374 bp Neighborhood of RT #1 [767, 6388] DD_cGKI COG3436 DDE_Tnp_IS66 RVT-GII GIIM GT4_PimA-like IS5 Feature: gene Location: 767-1399 bp Ori: EYE13416.1 Feature: domain Description: DD_cGKI Location: 806-911 bp Feature: domain Description: DD_cGKI Location: 806-91 1 bp Feature: domain Description: COG3436 Location: 1040-1379 bp Feature: domain Description: COG3436 Location: 1 040-1 379 bp Feature: gene Location: 1484-2203 bp Ori: EYE13417.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1493-2063 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 493-2063 bp Feature: gene Location: 2602-3729 bp Ori: EYE13418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698-3352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698-3352 bp Feature: domain Description: GIIM Note: maturase Location: 3430-3655 bp Feature: domain Description: GIIM Note: maturase Location: 3430-3655 bp Feature: gene Location: 4186-4902 bp Ori: EYE13419.1 Feature: domain Description: GT4_PimA-like Location: 4429-4897 bp Feature: domain Description: GT4_PimA-like Location: 4429-4897 bp Feature: gene Location: 5408-6388 bp Ori: EYE13420.1 Feature: domain Description: IS5 Location: 5597-6374 bp Feature: domain Description: IS5 Location: 5597-6374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DD_cGKI (cl17044), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801), IS5 (COG3039)

Seq: JHDM01000105.1 Escherichia coli 1-110-08_S3_C2 e111008S3C2.contig.104_1, whole genome shotgun sequence (2554 bp)
Overview 1 RT 1: 52-2436 bp Neighborhood of RT #1 [52, 2507] GIIM RVT-GII InsG Feature: gene Location: 52-192 bp Ori: EYE14670.1 Feature: domain Description: GIIM Note: maturase Location: 58-160 bp Feature: domain Description: GIIM Note: maturase Location: 58-160 bp Feature: gene Location: 173-673 bp Ori: EYE14671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179-488 bp Feature: gene Location: 1395-2507 bp Ori: EYE14672.1 Feature: domain Description: InsG Location: 1398-2436 bp Feature: domain Description: InsG Location: 1398-2 436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, InsG (COG3385)

Seq: JHDM01000068.1 Escherichia coli 1-110-08_S3_C2 e111008S3C2.contig.67_1, whole genome shotgun sequence (8087 bp)
Overview 1 RT 1: 20-1430 bp Neighborhood of RT #1 [20, 1453] RVT-GII GIIM PHA02517 DDE_Tnp_IS66_C Feature: gene Location: 20-715 bp Ori: EYE19009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-197 bp Feature: domain Description: GIIM Note: maturase Location: 272-491 bp Feature: domain Description: GIIM Note: maturase Location: 272-491 bp Feature: gene Location: 892-1278 bp Ori: EYE19010.1 Feature: domain Description: PHA02517 Location: 895-1276 bp Feature: domain Description: PHA02517 Location: 895-1276 bp Feature: gene Location: 1244-1453 bp Ori: EYE19011.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 1325-1430 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13 25-143 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66_C (pfam13817)