myRT

myRT report for GCA_000601335.1_ASM60133v1

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Seq: JHDL01000153.1 Escherichia coli 1-110-08_S3_C3 e111008S3C3.contig.152_1, whole genome shotgun sequence (22636 bp)
Overview 1 RT 1: 18-5430 bp 2 RT 2: 20509-21715 bp Neighborhood of RT #1 [18, 5444] COG3436 DDE_Tnp_IS66 RVT-GII GIIM GT4_PimA-like IS5 Neighborhood of RT #2 [20509, 21900] PHA02517 RVT-GII Feature: gene Location: 18-455 bp Ori: EYE08476.1 Feature: domain Description: COG3436 Location: 96-435 bp Feature: domain Description: COG3436 Location: 96-435 bp Feature: gene Location: 540-1259 bp Ori: EYE08477.1 Feature: domain Description: DDE_Tnp_IS66 Location: 549-1119 bp Feature: domain Description: DDE_Tnp_IS66 Location: 549-1 1 1 9 bp Feature: gene Location: 1658-2785 bp Ori: EYE08478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1754-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 754-2408 bp Feature: domain Description: GIIM Note: maturase Location: 2486-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2486-271 1 bp Feature: gene Location: 3242-3958 bp Ori: EYE08479.1 Feature: domain Description: GT4_PimA-like Location: 3485-3953 bp Feature: domain Description: GT4_PimA-like Location: 3485-3953 bp Feature: gene Location: 4464-5444 bp Ori: EYE08480.1 Feature: domain Description: IS5 Location: 4653-5430 bp Feature: domain Description: IS5 Location: 4653-5430 bp Feature: gene Location: 20509-20895 bp Ori: EYE08496.1 Feature: domain Description: PHA02517 Location: 20512-20893 bp Feature: domain Description: PHA0251 7 Location: 2051 2-20893 bp Feature: gene Location: 21072-21419 bp Feature: gene Location: 21400-21900 bp Ori: EYE08498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21406-21715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 406-21 71 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801), IS5 (COG3039), PHA02517 (putative transposase OrfB; Reviewed)