myRT

myRT report for GCA_000601355.1_ASM60135v1

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Seq: JHDK01000033.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.32_1, whole genome shotgun sequence (15235 bp)
Overview 1 RT 1: 11722-15167 bp Neighborhood of RT #1 [11722, 15232] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11722-12339 bp Ori: EYE09448.1 Feature: domain Description: autotrans_barl Location: 11845-12286 bp Feature: domain Description: autotrans_barl Location: 1 1 845-1 2286 bp Feature: gene Location: 12342-12788 bp Ori: EYE09449.1 Feature: domain Description: PHA02517 Location: 12345-12786 bp Feature: domain Description: PHA0251 7 Location: 1 2345-1 2786 bp Feature: gene Location: 12905-14413 bp Ori: EYE09450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13163-13895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 63-1 3895 bp Feature: domain Description: GIIM Note: maturase Location: 13970-14168 bp Feature: domain Description: GIIM Note: maturase Location: 1 3970-1 41 68 bp Feature: gene Location: 15020-15232 bp Ori: EYE09451.1 Feature: domain Description: PHA02517 Location: 15023-15167 bp Feature: domain Description: PHA0251 7 Location: 1 5023-1 51 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JHDK01000037.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.36_1, whole genome shotgun sequence (18826 bp)
Overview 1 RT 1: 107-2974 bp 2 RT 2: 14604-18475 bp Neighborhood of RT #1 [107, 2976] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [14604, 18720] rve PHA02517 RVT-GII GIIM Feature: gene Location: 107-1615 bp Ori: EYE09319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172 -1370 bp Feature: gene Location: 2222-2701 bp Ori: EYE09320.1 Feature: domain Description: PHA02517 Location: 2282-2636 bp Feature: domain Description: PHA02 517 Location: 2 2 82 -2 636 bp Feature: gene Location: 2701-2976 bp Ori: EYE09321.1 Feature: domain Description: InsE Location: 2743-2974 bp Feature: domain Description: InsE Location: 2 743-2 974 bp Feature: gene Location: 14604-16070 bp Ori: EYE09338.1 Feature: domain Description: rve Location: 14943-15336 bp Feature: domain Description: rve Location: 14943-15336 bp Feature: gene Location: 16393-16605 bp Ori: EYE09339.1 Feature: domain Description: PHA02517 Location: 16396-16540 bp Feature: domain Description: PHA02 517 Location: 16396-16540 bp Feature: gene Location: 17212-18720 bp Ori: EYE09340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17470-18202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17470-182 02 bp Feature: domain Description: GIIM Note: maturase Location: 18277-18475 bp Feature: domain Description: GIIM Note: maturase Location: 182 77-18475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), rve (pfam00665)

Seq: JHDK01000085.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.84_1, whole genome shotgun sequence (144417 bp)
Overview 1 RT 1: 245-6276 bp Neighborhood of RT #1 [245, 6413] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 245-385 bp Ori: EYE07822.1 Feature: domain Description: SfsB Location: 254-326 bp Feature: domain Description: SfsB Location: 254-3 26 bp Feature: gene Location: 382-852 bp Feature: gene Location: 1199-4408 bp Ori: EYE07824.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1727-2216 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1727-2216 bp Feature: domain Description: nitrilase Location: 3722-4319 bp Feature: domain Description: nitrilase Location: 3 722-43 19 bp Feature: gene Location: 4724-5506 bp Ori: EYE07825.1 Feature: domain Description: AbiEi_3_N Location: 4736-4997 bp Feature: domain Description: AbiEi_3 _N Location: 473 6-4997 bp Feature: domain Description: AbiEi_3 Location: 5009-5465 bp Feature: domain Description: AbiEi_3 Location: 5009-5465 bp Feature: gene Location: 5493-6413 bp Ori: EYE07826.1 Feature: domain Description: AbiEii Location: 5535-6276 bp Feature: domain Description: AbiEii Location: 553 5-6276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JHDK01000017.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.16_1, whole genome shotgun sequence (13913 bp)
Overview 1 RT 1: 10938-13562 bp Neighborhood of RT #1 [10938, 13807] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 10938-11213 bp Ori: EYE10168.1 Feature: domain Description: InsE Location: 10980-11211 bp Feature: domain Description: InsE Location: 10980-11211 bp Feature: gene Location: 11213-11692 bp Ori: EYE10169.1 Feature: domain Description: PHA02517 Location: 11273-11627 bp Feature: domain Description: PHA02517 Location: 11273-11627 bp Feature: gene Location: 12299-13807 bp Ori: EYE10170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12557-13289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12557-13289 bp Feature: domain Description: GIIM Note: maturase Location: 13364-13562 bp Feature: domain Description: GIIM Note: maturase Location: 13364 -13562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JHDK01000097.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.96_1, whole genome shotgun sequence (16814 bp)
Overview 1 RT 1: 4-3589 bp Neighborhood of RT #1 [4, 3594] PHA02517 RVT-GII GIIM Tra5 InsE Feature: gene Location: 4-216 bp Ori: EYE06963.1 Feature: domain Description: PHA02517 Location: 7-151 bp Feature: domain Description: PHA025 17 Location: 7-15 1 bp Feature: gene Location: 823-2331 bp Ori: EYE06964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1888-2086 bp Feature: domain Description: GIIM Note: maturase Location: 1888-2086 bp Feature: gene Location: 2651-3298 bp Ori: EYE06965.1 Feature: domain Description: Tra5 Location: 2762-3272 bp Feature: domain Description: Tra5 Location: 2762-3272 bp Feature: gene Location: 3295-3594 bp Ori: EYE06966.1 Feature: domain Description: InsE Location: 3322-3589 bp Feature: domain Description: InsE Location: 3322-35 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), InsE (COG2963)

Seq: JHDK01000034.1 Escherichia coli 1-110-08_S4_C1 e111008S4C1.contig.33_1, whole genome shotgun sequence (24027 bp)
Overview 1 RT 1: 21130-23959 bp Neighborhood of RT #1 [21130, 24024] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 21130-21324 bp Ori: EYE09411.1 Feature: domain Description: PHA02517 Location: 21148-21322 bp Feature: domain Description: PHA02517 Location: 21148-21322 bp Feature: gene Location: 21287-21580 bp Ori: EYE09412.1 Feature: domain Description: PHA02517 Location: 21290-21563 bp Feature: domain Description: PHA02517 Location: 21290-2156 3 bp Feature: gene Location: 21697-23205 bp Ori: EYE09413.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21955-22687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21955-226 87 bp Feature: domain Description: GIIM Note: maturase Location: 22762-22960 bp Feature: domain Description: GIIM Note: maturase Location: 2276 2-2296 0 bp Feature: gene Location: 23812-24024 bp Ori: EYE09414.1 Feature: domain Description: PHA02517 Location: 23815-23959 bp Feature: domain Description: PHA02517 Location: 23815-23959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)