myRT

myRT report for GCA_000601485.1_Chondromyces_apiculatus_DSM_436_genome_assembly

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Seq: ASRX01000016.1 Chondromyces apiculatus DSM 436 contig16, whole genome shotgun sequence (218194 bp)
Overview 1 RT 1: 108803-117550 bp Neighborhood of RT #1 [108803, 117894] SWIM RVT-Retrons PreP Methyltransf_11 Feature: gene Location: 108803-110452 bp Feature: gene Location: 110449-112677 bp Feature: domain Description: SWIM Location: 112189-112261 bp Feature: domain Description: SWIM Location: 1 1 21 89-1 1 2261 bp Feature: gene Location: 112994-114679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113834-114452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3834-1 1 4452 bp Feature: gene Location: 114764-117052 bp Feature: domain Description: PreP Location: 114986-117008 bp Feature: domain Description: PreP Location: 1 1 4986-1 1 7008 bp Feature: gene Location: 117061-117894 bp Feature: domain Description: Methyltransf_11 Location: 117268-117550 bp Feature: domain Description: Methyltransf_1 1 Location: 1 1 7268-1 1 7550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, PreP (COG1505), Methyltransf_11 (pfam08241)

Seq: ASRX01000112.1 Chondromyces apiculatus DSM 436 contig112, whole genome shotgun sequence (26606 bp)
Overview 1 RT 1: 138-3613 bp Neighborhood of RT #1 [138, 3613] RVT-GII GIIM FHA DUF4388 Feature: gene Location: 138-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-102 6 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1308 bp Feature: domain Description: GIIM Note: maturase Location: 1092 -1308 bp Feature: gene Location: 2441-3214 bp Feature: domain Description: FHA Location: 2444-2615 bp Feature: domain Description: FHA Location: 2 444-2 615 bp Feature: domain Description: DUF4388 Location: 2687-2990 bp Feature: domain Description: DUF4388 Location: 2 687-2 990 bp Feature: gene Location: 3299-3613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FHA (smart00240), DUF4388 (pfam14332)

Seq: ASRX01000060.1 Chondromyces apiculatus DSM 436 contig60, whole genome shotgun sequence (95655 bp)
Overview 1 RT 1: 4383-18093 bp Neighborhood of RT #1 [4383, 18093] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 SWIM RVT-Retrons PRK01889 Feature: gene Location: 4383-11282 bp Feature: domain Description: WD40 Location: 4413-5049 bp Feature: domain Description: WD40 Location: 4413 -5049 bp Feature: domain Description: WD40 Location: 5091-5208 bp Feature: domain Description: WD40 Location: 5091-5208 bp Feature: domain Description: HEAT_2 Location: 5496-5748 bp Feature: domain Description: HEAT_2 Location: 5496-5748 bp Feature: domain Description: HEAT_2 Location: 6339-6591 bp Feature: domain Description: HEAT_2 Location: 63 3 9-6591 bp Feature: domain Description: HEAT_2 Location: 6843-7032 bp Feature: domain Description: HEAT_2 Location: 6843 -703 2 bp Feature: domain Description: HEAT_2 Location: 7434-7665 bp Feature: domain Description: HEAT_2 Location: 743 4-7665 bp Feature: domain Description: HEAT_2 Location: 7707-7923 bp Feature: domain Description: HEAT_2 Location: 7707-7923 bp Feature: domain Description: HEAT_2 Location: 8517-8676 bp Feature: domain Description: HEAT_2 Location: 8517-8676 bp Feature: domain Description: HEAT_2 Location: 8703-8919 bp Feature: domain Description: HEAT_2 Location: 8703 -8919 bp Feature: domain Description: HEAT_2 Location: 9123-9315 bp Feature: domain Description: HEAT_2 Location: 9123 -93 15 bp Feature: domain Description: HEAT_2 Location: 9354-9579 bp Feature: domain Description: HEAT_2 Location: 93 54-9579 bp Feature: domain Description: HEAT_2 Location: 9858-10059 bp Feature: domain Description: HEAT_2 Location: 9858-10059 bp Feature: domain Description: HEAT_2 Location: 10611-10839 bp Feature: domain Description: HEAT_2 Location: 10611-1083 9 bp Feature: domain Description: HEAT_2 Location: 11010-11232 bp Feature: domain Description: HEAT_2 Location: 11010-1123 2 bp Feature: gene Location: 11279-13183 bp Feature: domain Description: SWIM Location: 12746-12830 bp Feature: domain Description: SWIM Location: 12746-1283 0 bp Feature: gene Location: 13559-14998 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14108-14759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14108-14759 bp Feature: gene Location: 15086-16192 bp Feature: domain Description: PRK01889 Location: 15143-16127 bp Feature: domain Description: PRK01889 Location: 15143 -16127 bp Feature: gene Location: 16243-18093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, PRK01889 (GTPase RsgA; Reviewed), WD40 (smart00320), HEAT_2 (pfam13646)