myRT

myRT report for GCA_000604385.1_B.pum_Fairview_1.0

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Seq: JFBY01000014.1 Bacillus safensis strain Fairview contig25, whole genome shotgun sequence (80383 bp)
Overview 1 RT 1: 2-2201 bp Neighborhood of RT #1 [2, 2221] RVT-Retrons HTH_16 sigma70-ECF Feature: gene Location: 2-1201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128-716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 28-71 6 bp Feature: gene Location: 1570-1797 bp Feature: domain Description: HTH_16 Location: 1597-1789 bp Feature: domain Description: HTH_1 6 Location: 1 597-1 789 bp Feature: gene Location: 1790-2221 bp Feature: domain Description: sigma70-ECF Location: 1832-2201 bp Feature: domain Description: sigma70-ECF Location: 1 832-2201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_16 (pfam12645), sigma70-ECF (TIGR02937)

Seq: JFBY01000018.1 Bacillus safensis strain Fairview contig56_1, whole genome shotgun sequence (568093 bp)
Overview 1 RT 1: 100435-105224 bp Neighborhood of RT #1 [100435, 105505] PinE Zn_ribbon_recom RVT-UG28 PRK05803 RapH_N TPR_2 TPR_2 TPR_4 Feature: gene Location: 100435-100602 bp Feature: gene Location: 100529-102031 bp Feature: domain Description: PinE Location: 100532-101096 bp Feature: domain Description: PinE Location: 100532 -101096 bp Feature: domain Description: Zn_ribbon_recom Location: 101423-101603 bp Feature: domain Description: Zn_ribbon_recom Location: 10142 3-101603 bp Feature: gene Location: 102069-103571 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 102357-102996 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 102 357-102 996 bp Feature: gene Location: 103755-104180 bp Feature: domain Description: PRK05803 Location: 103785-104124 bp Feature: domain Description: PRK05803 Location: 103785-10412 4 bp Feature: gene Location: 104384-105505 bp Feature: domain Description: RapH_N Location: 104396-104576 bp Feature: domain Description: RapH_N Location: 104396-104576 bp Feature: domain Description: TPR_2 Location: 104792-104888 bp Feature: domain Description: TPR_2 Location: 104792 -104888 bp Feature: domain Description: TPR_2 Location: 105041-105125 bp Feature: domain Description: TPR_2 Location: 105041-10512 5 bp Feature: domain Description: TPR_4 Location: 105152-105224 bp Feature: domain Description: TPR_4 Location: 105152 -1052 2 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT-UG28, PRK05803 (RNA polymerase sporulation sigma factor SigK), RapH_N (pfam18801), TPR_2 (pfam07719), TPR_4 (pfam07721)