myRT

myRT report for GCA_000611145.2_CupriavidusSK32.0

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Seq: JFJV02000199.1 Cupriavidus sp. SK-3 Scaffold199, whole genome shotgun sequence (23317 bp)
Overview 1 RT 1: 39-6106 bp Neighborhood of RT #1 [39, 6120] RVT-GII GIIM HNHc gltX MATE_NorM_like Feature: gene Location: 39-1529 bp Ori: KDP85886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 74-822 bp Feature: domain Description: GIIM Note: maturase Location: 873-1107 bp Feature: domain Description: GIIM Note: maturase Location: 873-1 1 07 bp Feature: domain Description: HNHc Note: nucleases Location: 1326-1491 bp Feature: domain Description: HNHc Note: nucleases Location: 1 326-1 491 bp Feature: gene Location: 1672-3075 bp Ori: KDP85887.1 Feature: domain Description: gltX Location: 1678-3064 bp Feature: domain Description: gltX Location: 1 678-3064 bp Feature: gene Location: 4768-6120 bp Ori: KDP85888.1 Feature: domain Description: MATE_NorM_like Location: 4789-6106 bp Feature: domain Description: MATE_NorM_like Location: 4789-61 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), gltX (PRK14895), MATE_NorM_like (cd13137)

Seq: JFJV02000174.1 Cupriavidus sp. SK-3 Scaffold174, whole genome shotgun sequence (9048 bp)
Overview 1 RT 1: 1-6508 bp Neighborhood of RT #1 [1, 6516] COG2331 SLC5sbd_CHT RVT_N RVT-GII GIIM HNHc TPMT Feature: gene Location: 1-211 bp Ori: KDP86288.1 Feature: domain Description: COG2331 Location: 4-205 bp Feature: domain Description: COG2 331 Location: 4-2 05 bp Feature: gene Location: 409-1845 bp Ori: KDP86289.1 Feature: domain Description: SLC5sbd_CHT Location: 418-1807 bp Feature: domain Description: SLC5sbd_CHT Location: 418-1807 bp Feature: gene Location: 2071-3780 bp Ori: KDP86290.1 Feature: domain Description: RVT_N Location: 2128-2371 bp Feature: domain Description: RVT_N Location: 2 12 8-2 371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416-3064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 416-3064 bp Feature: domain Description: GIIM Note: maturase Location: 3115-3349 bp Feature: domain Description: GIIM Note: maturase Location: 3115-3349 bp Feature: domain Description: HNHc Note: nucleases Location: 3574-3733 bp Feature: domain Description: HNHc Note: nucleases Location: 3574-3733 bp Feature: gene Location: 5256-5864 bp Feature: gene Location: 5881-6516 bp Ori: KDP86292.1 Feature: domain Description: TPMT Location: 5953-6508 bp Feature: domain Description: TPMT Location: 5953-6508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), SLC5sbd_CHT (cd11474), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TPMT (pfam05724)

Seq: JFJV02000061.1 Cupriavidus sp. SK-3 Scaffold61, whole genome shotgun sequence (11803 bp)
Overview 1 RT 1: 4531-10713 bp Neighborhood of RT #1 [4531, 10713] RVT-GII GIIM RVT-GII GIIM DUF5372 Feature: gene Location: 4531-5088 bp Feature: gene Location: 5842-6024 bp Feature: gene Location: 6915-8219 bp Ori: KDP88232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7200-7839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7200-783 9 bp Feature: domain Description: GIIM Note: maturase Location: 7914-8133 bp Feature: domain Description: GIIM Note: maturase Location: 7914-813 3 bp Feature: gene Location: 8773-9975 bp Ori: KDP88233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8776-9454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8776-9454 bp Feature: domain Description: GIIM Note: maturase Location: 9565-9727 bp Feature: domain Description: GIIM Note: maturase Location: 9565-9727 bp Feature: gene Location: 10020-10328 bp Ori: KDP88234.1 Feature: domain Description: DUF5372 Location: 10053-10284 bp Feature: domain Description: DUF53 72 Location: 10053 -10284 bp Feature: gene Location: 10381-10713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: JFJV02000153.1 Cupriavidus sp. SK-3 Scaffold153, whole genome shotgun sequence (30352 bp)
Overview 1 RT 1: 26546-29760 bp Neighborhood of RT #1 [26546, 29894] RVT-GII GIIM Hns DUF2442 Feature: gene Location: 26546-26764 bp Feature: gene Location: 27021-27260 bp Feature: gene Location: 27255-27854 bp Ori: KDP86609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27264-27468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27264 -274 68 bp Feature: domain Description: GIIM Note: maturase Location: 27546-27768 bp Feature: domain Description: GIIM Note: maturase Location: 2754 6-27768 bp Feature: gene Location: 29134-29376 bp Ori: KDP86610.1 Feature: domain Description: Hns Location: 29194-29326 bp Feature: domain Description: Hns Location: 29194 -29326 bp Feature: gene Location: 29472-29894 bp Ori: KDP86611.1 Feature: domain Description: DUF2442 Location: 29550-29760 bp Feature: domain Description: DUF24 4 2 Location: 29550-29760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Hns (COG2916), DUF2442 (pfam10387)

Seq: JFJV02000065.1 Cupriavidus sp. SK-3 Scaffold65, whole genome shotgun sequence (12490 bp)
Overview 1 RT 1: 6477-10587 bp Neighborhood of RT #1 [6477, 10655] Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM COG3547 Feature: gene Location: 6477-8459 bp Ori: KDP88150.1 Feature: domain Description: Resolvase Location: 6498-6936 bp Feature: domain Description: Resolvase Location: 6498-6936 bp Feature: domain Description: Recombinase Location: 7032-7392 bp Feature: domain Description: Recombinase Location: 7032-7392 bp Feature: domain Description: Zn_ribbon_recom Location: 7437-7641 bp Feature: domain Description: Zn_ribbon_recom Location: 7437-7641 bp Feature: gene Location: 8809-9567 bp Ori: KDP88151.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8812-9061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8812-9061 bp Feature: domain Description: GIIM Note: maturase Location: 9112-9346 bp Feature: domain Description: GIIM Note: maturase Location: 9112-9346 bp Feature: gene Location: 9558-10655 bp Ori: KDP88152.1 Feature: domain Description: COG3547 Location: 9660-10587 bp Feature: domain Description: COG35 47 Location: 9660-105 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: JFJV02000004.1 Cupriavidus sp. SK-3 Scaffold4, whole genome shotgun sequence (17984 bp)
Overview 1 RT 1: 87-3513 bp Neighborhood of RT #1 [87, 3524] RVT_N RVT-GII GIIM HNHc YrvD PRK11788 Feature: gene Location: 87-1787 bp Ori: KDP89503.1 Feature: domain Description: RVT_N Location: 144-387 bp Feature: domain Description: RVT_N Location: 144-387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1080 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1365 bp Feature: domain Description: GIIM Note: maturase Location: 1131-136 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1584-1749 bp Feature: domain Description: HNHc Note: nucleases Location: 1584-1749 bp Feature: gene Location: 1953-2276 bp Ori: KDP89504.1 Feature: domain Description: YrvD Location: 1959-2184 bp Feature: domain Description: YrvD Location: 1959-2184 bp Feature: gene Location: 2280-3524 bp Ori: KDP89505.1 Feature: domain Description: PRK11788 Location: 2289-3513 bp Feature: domain Description: PRK11788 Location: 2289-3513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YrvD (COG5416), PRK11788 (tetratricopeptide repeat protein; Provisional)