myRT

myRT report for GCA_000611815.2_ASM61181v2

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Seq: JENI01000085.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_84.85, whole genome shotgun sequence (15280 bp)
Overview 1 RT 1: 6011-10660 bp Neighborhood of RT #1 [6011, 10731] RVT-GII DDE_Tnp_1 Feature: gene Location: 6011-6454 bp Feature: gene Location: 6951-7199 bp Feature: gene Location: 8002-9192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8314-9004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831 4-9004 bp Feature: gene Location: 9729-10190 bp Feature: gene Location: 10207-10731 bp Feature: domain Description: DDE_Tnp_1 Location: 10294-10660 bp Feature: domain Description: DDE_Tnp_1 Location: 1 0294-1 0660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JENI01000139.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_138.139, whole genome shotgun sequence (3357 bp)
Overview 1 RT 1: 316-3343 bp Neighborhood of RT #1 [316, 3357] MFS_LmrB_MDR_like RVT-GII Ser_Recombinase Feature: gene Location: 316-1791 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 403-1723 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 403-172 3 bp Feature: gene Location: 1778-1930 bp Feature: gene Location: 2443-2655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2602-2650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 602 -2 650 bp Feature: gene Location: 3070-3357 bp Feature: domain Description: Ser_Recombinase Location: 3124-3343 bp Feature: domain Description: Ser_Recombinase Location: 312 4-3343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Ser_Recombinase (cl02788), MFS_LmrB_MDR_like (cd17503)

Seq: JENI01000028.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_27.28, whole genome shotgun sequence (65031 bp)
Overview 1 RT 1: 33415-38507 bp Neighborhood of RT #1 [33415, 38533] RVT-GII GIIM PIN_MtVapC27-VapC40_like KOG2565 Feature: gene Location: 33415-34560 bp Feature: gene Location: 34592-34714 bp Feature: gene Location: 35329-36705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35644-36274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5644-3 6274 bp Feature: domain Description: GIIM Note: maturase Location: 36361-36565 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 61-3 6565 bp Feature: gene Location: 36874-37086 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 36949-37069 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 3 6949-3 7069 bp Feature: gene Location: 37274-38533 bp Feature: domain Description: KOG2565 Location: 37331-38507 bp Feature: domain Description: KOG2565 Location: 3 73 3 1-3 8507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_MtVapC27-VapC40_like (cd18681), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) )

Seq: JENI01000154.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_153.154, whole genome shotgun sequence (2236 bp)
Overview 1 RT 1: 85-2126 bp Neighborhood of RT #1 [85, 2236] RVT-GII GIIM HTH_17 HTH_17 Feature: gene Location: 85-1107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103-727 bp Feature: domain Description: GIIM Note: maturase Location: 808-1012 bp Feature: domain Description: GIIM Note: maturase Location: 808-1012 bp Feature: gene Location: 1097-2236 bp Feature: domain Description: HTH_17 Location: 1787-1898 bp Feature: domain Description: HTH_17 Location: 1787-1898 bp Feature: domain Description: HTH_17 Location: 2027-2126 bp Feature: domain Description: HTH_17 Location: 2027-2126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388)

Seq: JENI01000027.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_26.27, whole genome shotgun sequence (65693 bp)
Overview 1 RT 1: 85-5254 bp Neighborhood of RT #1 [85, 5307] RVT-GII GIIM PRK07819 PRK07819 crot-CoA-red Feature: gene Location: 85-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-35 2 bp Feature: domain Description: GIIM Note: maturase Location: 433-637 bp Feature: domain Description: GIIM Note: maturase Location: 433-637 bp Feature: gene Location: 2151-3929 bp Feature: domain Description: PRK07819 Location: 2175-3009 bp Feature: domain Description: PRK07819 Location: 2175 -3009 bp Feature: domain Description: PRK07819 Location: 3090-3927 bp Feature: domain Description: PRK07819 Location: 3090-3927 bp Feature: gene Location: 3970-5307 bp Feature: domain Description: crot-CoA-red Location: 4066-5254 bp Feature: domain Description: crot-CoA-red Location: 4066-5 25 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated), crot-CoA-red (TIGR01751), RVT-GII, GIIM (pfam08388)

Seq: JENI01000016.1 Frankia casuarinae strain Thr ThrDRAFT_scaffold_15.16, whole genome shotgun sequence (94909 bp)
Overview 1 RT 1: 3-2580 bp Neighborhood of RT #1 [3, 2594] RVT-GII GIIM Methyltransf_25 CheY Feature: gene Location: 3-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -279 bp Feature: domain Description: GIIM Note: maturase Location: 360-564 bp Feature: domain Description: GIIM Note: maturase Location: 36 0-56 4 bp Feature: gene Location: 933-1775 bp Feature: domain Description: Methyltransf_25 Location: 1131-1410 bp Feature: domain Description: Methyltransf_25 Location: 1131-1410 bp Feature: gene Location: 2208-2594 bp Feature: domain Description: CheY Location: 2217-2580 bp Feature: domain Description: CheY Location: 2217-2580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), RVT-GII, GIIM (pfam08388), Methyltransf_25 (pfam13649)