myRT

myRT report for GCA_000611975.2_PA103_1.0

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Seq: KK111610.1 Pseudomonas aeruginosa PA103 genomic scaffold scaffold-23, whole genome shotgun sequence (83338 bp)
Overview 1 RT 1: 361-11398 bp Neighborhood of RT #1 [361, 11400] HTH_17 INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 361-579 bp Feature: domain Description: HTH_17 Location: 409-574 bp Feature: domain Description: HTH_1 7 Location: 409-574 bp Feature: gene Location: 1541-2635 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2051-2552 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2051 -2552 bp Feature: gene Location: 2937-4475 bp Feature: RT Description: RVT_N Location: 2940-3087 bp Feature: RT Description: RVT_N Location: 2940-3087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135-3771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 35-3771 bp Feature: domain Description: GIIM Note: maturase Location: 3825-4056 bp Feature: domain Description: GIIM Note: maturase Location: 3825-4056 bp Feature: domain Description: HNH Note: nucleases Location: 4308-4446 bp Feature: domain Description: HNH Note: nucleases Location: 4308-4446 bp Feature: gene Location: 5703-9440 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5811-6468 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 581 1 -6468 bp Feature: domain Description: PRK09776 Location: 6681-7152 bp Feature: domain Description: PRK09776 Location: 6681 -71 52 bp Feature: domain Description: PAS Location: 7197-7734 bp Feature: domain Description: PAS Location: 71 97-7734 bp Feature: domain Description: PRK10060 Location: 7743-9390 bp Feature: domain Description: PRK1 0060 Location: 7743-9390 bp Feature: gene Location: 9547-11400 bp Feature: domain Description: PRK05658 Location: 9559-11398 bp Feature: domain Description: PRK05658 Location: 9559-1 1 398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HTH_17 (pfam12728), PRK05658 (RNA polymerase sigma factor RpoD; Validated)