myRT

myRT report for GCA_000612035.1_P_lum_BA1_v1

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Seq: JFGV01000016.1 Photorhabdus luminescens BA1 BA1DRAFT_contig_15.16, whole genome shotgun sequence (77641 bp)
Overview 1 RT 1: 1358-6072 bp Neighborhood of RT #1 [1358, 6104] SymE_toxin HTH_3 RVT-GII RVT-GII PRK04860 metK Feature: gene Location: 1358-1600 bp Ori: EYU15945.1 Feature: domain Description: SymE_toxin Location: 1409-1583 bp Feature: domain Description: SymE_toxin Location: 1 409-1 583 bp Feature: gene Location: 1679-1948 bp Ori: EYU15946.1 Feature: domain Description: HTH_3 Location: 1685-1769 bp Feature: domain Description: HTH_3 Location: 1 685-1 769 bp Feature: gene Location: 2434-3777 bp Ori: EYU15947.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794-3184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794-31 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3184-3400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 84-3400 bp Feature: gene Location: 4204-4788 bp Ori: EYU15948.1 Feature: domain Description: PRK04860 Location: 4234-4702 bp Feature: domain Description: PRK04860 Location: 4234-4702 bp Feature: gene Location: 4932-6104 bp Ori: EYU15949.1 Feature: domain Description: metK Location: 4947-6072 bp Feature: domain Description: metK Location: 4947-6072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SymE_toxin (pfam08845), HTH_3 (pfam01381), RVT-GII, PRK04860 (SprT family zinc-dependent metalloprotease), metK (TIGR01034)

Seq: JFGV01000080.1 Photorhabdus luminescens BA1 BA1DRAFT_contig_79.80, whole genome shotgun sequence (22744 bp)
Overview 1 RT 1: 64-2096 bp Neighborhood of RT #1 [64, 2104] RVT-Retrons INT_P4_C PRK09692 Feature: gene Location: 64-777 bp Ori: EYU13532.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 283-745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 83-745 bp Feature: gene Location: 977-1588 bp Ori: EYU13533.1 Feature: domain Description: INT_P4_C Location: 1082-1562 bp Feature: domain Description: INT_P4_C Location: 1082 -1562 bp Feature: gene Location: 1610-2104 bp Ori: EYU13534.1 Feature: domain Description: PRK09692 Location: 1619-2096 bp Feature: domain Description: PRK09692 Location: 1619-2 096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, INT_P4_C (cd00801), PRK09692 (Integrase; provisional)

Seq: JFGV01000091.1 Photorhabdus luminescens BA1 BA1DRAFT_contig_90.91, whole genome shotgun sequence (16049 bp)
Overview 1 RT 1: 1-2776 bp Neighborhood of RT #1 [1, 2838] group_II_RT_mat RVT-GII SfsB Feature: gene Location: 1-272 bp Feature: gene Location: 269-874 bp Ori: EYU13358.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 455-629 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 455-629 bp Feature: gene Location: 913-1332 bp Ori: EYU13359.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1279 bp Feature: gene Location: 1272-1385 bp Feature: gene Location: 2590-2838 bp Ori: EYU13361.1 Feature: domain Description: SfsB Location: 2602-2776 bp Feature: domain Description: SfsB Location: 2602-2776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, SfsB (COG3423)

Seq: JFGV01000112.1 Photorhabdus luminescens BA1 BA1DRAFT_contig_111.112, whole genome shotgun sequence (4219 bp)
Overview 1 RT 1: 2416-4139 bp Neighborhood of RT #1 [2416, 4219] RVT-GII GIIM Feature: gene Location: 2416-2733 bp Feature: gene Location: 3138-3239 bp Feature: gene Location: 3578-4219 bp Ori: EYU13164.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3668-3842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3668-384 2 bp Feature: domain Description: GIIM Note: maturase Location: 3923-4139 bp Feature: domain Description: GIIM Note: maturase Location: 3923-4 139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)