myRT

myRT report for GCA_000612225.1_PaeEhi1.0

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Seq: JFHX01000006.1 Paenibacillus ehimensis A2 contig_6, whole genome shotgun sequence (106532 bp)
Overview 1 RT 1: 1552-6693 bp Neighborhood of RT #1 [1552, 6845] AAA_17 RVT-UG12 PHA01976 Feature: gene Location: 1552-2601 bp Feature: gene Location: 2721-3248 bp Feature: domain Description: AAA_17 Location: 2748-3090 bp Feature: domain Description: AAA_1 7 Location: 2748-3090 bp Feature: gene Location: 4045-5013 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4051-4213 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 4051 -421 3 bp Feature: gene Location: 5447-6304 bp Feature: gene Location: 6480-6845 bp Feature: domain Description: PHA01976 Location: 6540-6693 bp Feature: domain Description: PHA01 976 Location: 6540-6693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_17 (pfam13207), RVT-UG12, PHA01976 (helix-turn-helix protein)

Seq: JFHX01000008.1 Paenibacillus ehimensis A2 contig_8, whole genome shotgun sequence (46043 bp)
Overview 1 RT 1: 2695-13145 bp Neighborhood of RT #1 [2695, 13145] YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 2695-8277 bp Feature: domain Description: YtxK Location: 4507-5260 bp Feature: domain Description: YtxK Location: 4507-52 60 bp Feature: domain Description: COG4646 Location: 5332-7963 bp Feature: domain Description: COG4646 Location: 5332 -7963 bp Feature: gene Location: 8360-8671 bp Feature: gene Location: 8856-10682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132-9963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132 -9963 bp Feature: domain Description: Intron_maturas2 Location: 10017-10302 bp Feature: domain Description: Intron_maturas2 Location: 10017-10302 bp Feature: domain Description: HNHc Note: nucleases Location: 10506-10653 bp Feature: domain Description: HNHc Note: nucleases Location: 10506-10653 bp Feature: gene Location: 10716-11816 bp Feature: domain Description: KOG1000 Location: 10836-11073 bp Feature: domain Description: KOG1000 Location: 10836-11073 bp Feature: gene Location: 12015-13145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: JFHX01000042.1 Paenibacillus ehimensis A2 contig_42, whole genome shotgun sequence (229822 bp)
Overview 1 RT 1: 58001-63541 bp Neighborhood of RT #1 [58001, 63541] DapF SF2_C_LHR RVT-GII B_ant_repeat Big_9 Big_9 Big_9 Big_9 B_ant_repeat B_ant_repeat LPXTG_anchor Feature: gene Location: 58001-59233 bp Feature: domain Description: DapF Location: 58415-59222 bp Feature: domain Description: DapF Location: 58415-59222 bp Feature: gene Location: 59283-59534 bp Feature: domain Description: SF2_C_LHR Location: 59286-59529 bp Feature: domain Description: SF2_C_LHR Location: 59286-59529 bp Feature: gene Location: 59686-59940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59794-59863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59794-59863 bp Feature: gene Location: 60006-63176 bp Feature: domain Description: B_ant_repeat Location: 60378-60507 bp Feature: domain Description: B_ant_repeat Location: 603 78-60507 bp Feature: domain Description: Big_9 Location: 60789-61032 bp Feature: domain Description: Big_9 Location: 60789-6103 2 bp Feature: domain Description: Big_9 Location: 61044-61308 bp Feature: domain Description: Big_9 Location: 61044-613 08 bp Feature: domain Description: Big_9 Location: 61320-61584 bp Feature: domain Description: Big_9 Location: 613 20-61584 bp Feature: domain Description: Big_9 Location: 61596-61881 bp Feature: domain Description: Big_9 Location: 61596-61881 bp Feature: domain Description: B_ant_repeat Location: 62088-62226 bp Feature: domain Description: B_ant_repeat Location: 62088-62226 bp Feature: domain Description: B_ant_repeat Location: 62490-62637 bp Feature: domain Description: B_ant_repeat Location: 62490-6263 7 bp Feature: domain Description: LPXTG_anchor Location: 63081-63171 bp Feature: domain Description: LPXTG_anchor Location: 63 081-63 171 bp Feature: gene Location: 63203-63541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DapF (TIGR00652), SF2_C_LHR (cd18796), RVT-GII, B_ant_repeat (TIGR01451), Big_9 (pfam17963), LPXTG_anchor (TIGR01167)

Seq: JFHX01000153.1 Paenibacillus ehimensis A2 contig_153, whole genome shotgun sequence (933 bp)
Overview 1 RT 1: 37-754 bp Neighborhood of RT #1 [37, 930] RVT-GII GIIM Feature: gene Location: 37-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3-4 69 bp Feature: domain Description: GIIM Note: maturase Location: 526-754 bp Feature: domain Description: GIIM Note: maturase Location: 526-754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)