myRT

myRT report for GCA_000613385.1_ASM61338v1

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Seq: BAIW01000193.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00193, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 1-1706 bp Neighborhood of RT #1 [1, 1816] RVT-GII GIIM Feature: gene Location: 1-165 bp Feature: gene Location: 548-1816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761 -1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1499-1706 bp Feature: domain Description: GIIM Note: maturase Location: 1 499-1 706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BAIW01000139.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00139, whole genome shotgun sequence (7307 bp)
Overview 1 RT 1: 219-3082 bp Neighborhood of RT #1 [219, 3082] group_II_RT_mat RVT-GII CcmA Feature: gene Location: 219-431 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 297-420 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 97-42 0 bp Feature: gene Location: 421-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1081 bp Feature: gene Location: 1346-2245 bp Feature: domain Description: CcmA Location: 1403-2087 bp Feature: domain Description: CcmA Location: 1403-2 087 bp Feature: gene Location: 2252-3082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, CcmA (COG4133)

Seq: BAIW01000133.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00133, whole genome shotgun sequence (8542 bp)
Overview 1 RT 1: 182-8105 bp Neighborhood of RT #1 [182, 8224] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 182-367 bp Feature: gene Location: 413-784 bp Feature: gene Location: 1003-2415 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1393-2116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 93 -2116 bp Feature: gene Location: 2423-2644 bp Feature: domain Description: Avd_like Location: 2429-2624 bp Feature: domain Description: Avd_like Location: 2429-2624 bp Feature: gene Location: 2747-8224 bp Feature: domain Description: DUF1566 Location: 7883-8105 bp Feature: domain Description: DUF1566 Location: 7883 -8105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: BAIW01000120.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00120, whole genome shotgun sequence (10956 bp)
Overview 1 RT 1: 1944-7411 bp Neighborhood of RT #1 [1944, 7411] RVT-DGRs Feature: gene Location: 1944-2120 bp Feature: gene Location: 2299-2754 bp Feature: gene Location: 2778-4082 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2988-3666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2988-3666 bp Feature: gene Location: 3957-4391 bp Feature: gene Location: 4598-7411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BAIW01000085.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00085, whole genome shotgun sequence (19186 bp)
Overview 1 RT 1: 3-5690 bp Neighborhood of RT #1 [3, 5692] RVT-GII RVT-GII PRK00566 PRK00566 Feature: gene Location: 3-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-5 22 bp Feature: gene Location: 546-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870-933 bp Feature: gene Location: 1410-3272 bp Feature: domain Description: PRK00566 Location: 1413-3231 bp Feature: domain Description: PRK005 66 Location: 1413-3231 bp Feature: gene Location: 3326-5692 bp Feature: domain Description: PRK00566 Location: 3347-5690 bp Feature: domain Description: PRK005 66 Location: 3347-5 690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional)

Seq: BAIW01000027.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00027, whole genome shotgun sequence (42967 bp)
Overview 1 RT 1: 30517-33893 bp Neighborhood of RT #1 [30517, 33893] RVT-DGRs Feature: gene Location: 30517-31644 bp Feature: gene Location: 31863-32066 bp Feature: gene Location: 32350-33165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32668-33004 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 326 6 8-33004 bp Feature: gene Location: 33131-33361 bp Feature: gene Location: 33309-33893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BAIW01000019.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00019, whole genome shotgun sequence (54041 bp)
Overview 1 RT 1: 44083-47615 bp Neighborhood of RT #1 [44083, 47615] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 44083-44892 bp Feature: domain Description: DUF1566 Location: 44614-44863 bp Feature: domain Description: DUF1566 Location: 44614-44863 bp Feature: gene Location: 45039-45446 bp Feature: domain Description: Avd_like Location: 45072-45381 bp Feature: domain Description: Avd_like Location: 4507 2-45381 bp Feature: gene Location: 45461-46882 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45836-46622 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45836-46622 bp Feature: gene Location: 46845-47123 bp Feature: gene Location: 47322-47615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: BAIW01000014.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00014, whole genome shotgun sequence (63106 bp)
Overview 1 RT 1: 49175-52124 bp Neighborhood of RT #1 [49175, 52138] RVT_N RVT-GII RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 49175-49381 bp Feature: gene Location: 49561-49896 bp Feature: domain Description: RVT_N Location: 49660-49888 bp Feature: domain Description: RVT_N Location: 49660-498 8 8 bp Feature: gene Location: 49874-50497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49946-50441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49946-50441 bp Feature: gene Location: 50476-51258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50482-50593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5048 2-50593 bp Feature: domain Description: GIIM Note: maturase Location: 50644-50878 bp Feature: domain Description: GIIM Note: maturase Location: 50644-508 78 bp Feature: gene Location: 51355-51876 bp Feature: domain Description: Bac_Flav_CT_G Location: 51379-51835 bp Feature: domain Description: Bac_Flav_CT_G Location: 51379-518 35 bp Feature: gene Location: 51866-52138 bp Feature: domain Description: DUF3876 Location: 51884-52124 bp Feature: domain Description: DUF38 76 Location: 518 8 4-52124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: BAIW01000007.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00007, whole genome shotgun sequence (100056 bp)
Overview 1 RT 1: 88740-93299 bp Neighborhood of RT #1 [88740, 93310] DUF1566 Avd_like RVT-DGRs RMtype1_S_AbaB8300I-TRD1-CR1_like HsdS RMtype1_S_BliBORF2384P-TRD1-CR1_like RMtype1_S_BliBORF2384P-TRD1-CR1_like Feature: gene Location: 88740-88910 bp Feature: domain Description: DUF1566 Location: 88767-88884 bp Feature: domain Description: DUF1566 Location: 88767-88884 bp Feature: gene Location: 89056-89436 bp Feature: domain Description: Avd_like Location: 89083-89389 bp Feature: domain Description: Avd_like Location: 89 083-89 389 bp Feature: gene Location: 89451-90872 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89823-90558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89 823-9 0558 bp Feature: gene Location: 91281-91712 bp Feature: domain Description: RMtype1_S_AbaB8300I-TRD1-CR1_like Location: 91323-91704 bp Feature: domain Description: RMtype1_S_AbaB8300I-TRD1-CR1_like Location: 9 1323-9 1704 bp Feature: gene Location: 91766-93310 bp Feature: domain Description: HsdS Location: 91787-91967 bp Feature: domain Description: HsdS Location: 9 1787-9 19 67 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 92051-92549 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 9 2051-9 2549 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 92975-93299 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 9 29 75-9 329 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, RMtype1_S_AbaB8300I-TRD1-CR1_like (cd17263), HsdS (COG0732), RMtype1_S_BliBORF2384P-TRD1-CR1_like (cd17496)

Seq: BAIW01000005.1 Bacteroides acidifaciens JCM 10556 DNA, contig: JCM10556.contig00005, whole genome shotgun sequence (127062 bp)
Overview 1 RT 1: 26548-30197 bp Neighborhood of RT #1 [26548, 30197] RVT-DGRs Feature: gene Location: 26548-26928 bp Feature: gene Location: 26925-27353 bp Feature: gene Location: 27316-28503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27646-28345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27646-28345 bp Feature: gene Location: 28625-28762 bp Feature: gene Location: 28836-30197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs