myRT

myRT report for GCA_000613425.1_ASM61342v1

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Seq: BAIY01000049.1 Bacteroides fragilis JCM 11017 DNA, contig: JCM11017.contig00049, whole genome shotgun sequence (24715 bp)
Overview 1 RT 1: 19558-20979 bp Neighborhood of RT #1 [19558, 20979] HTH_28 RVT-GII Feature: gene Location: 19558-19692 bp Feature: gene Location: 19767-20057 bp Feature: domain Description: HTH_28 Location: 19791-19938 bp Feature: domain Description: HTH_28 Location: 1 9791 -1 9938 bp Feature: gene Location: 20178-20375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20181-20373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 81 -20373 bp Feature: gene Location: 20404-20613 bp Feature: gene Location: 20617-20979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: BAIY01000041.1 Bacteroides fragilis JCM 11017 DNA, contig: JCM11017.contig00041, whole genome shotgun sequence (31697 bp)
Overview 1 RT 1: 23922-27355 bp Neighborhood of RT #1 [23922, 27357] DUF3873 RVT-AbiP2 DUF3872 TraO Feature: gene Location: 23922-24134 bp Feature: domain Description: DUF3873 Location: 23928-24126 bp Feature: domain Description: DUF3873 Location: 2 392 8-2 412 6 bp Feature: gene Location: 24160-24639 bp Feature: gene Location: 24765-26264 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 25188-25644 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 5188-2 5644 bp Feature: gene Location: 26317-26757 bp Feature: domain Description: DUF3872 Location: 26347-26740 bp Feature: domain Description: DUF3872 Location: 2 6347-2 6740 bp Feature: gene Location: 26779-27357 bp Feature: domain Description: TraO Location: 26857-27355 bp Feature: domain Description: TraO Location: 2 6857-2 7355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626)

Seq: BAIY01000007.1 Bacteroides fragilis JCM 11017 DNA, contig: JCM11017.contig00007, whole genome shotgun sequence (213846 bp)
Overview 1 RT 1: 77612-86570 bp Neighborhood of RT #1 [77612, 86578] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 77612-79801 bp Feature: domain Description: GlnA3 Location: 77687-79799 bp Feature: domain Description: GlnA3 Location: 77687-79799 bp Feature: gene Location: 80041-82260 bp Feature: gene Location: 82467-83579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82782-83331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82782-83 3 3 1 bp Feature: gene Location: 83721-85514 bp Feature: domain Description: rpsA Location: 83799-85407 bp Feature: domain Description: rpsA Location: 83 799-85407 bp Feature: gene Location: 85664-86578 bp Feature: domain Description: RNase_Z Location: 85679-86570 bp Feature: domain Description: RNase_Z Location: 85679-86570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)