myRT

myRT report for GCA_000613645.1_ASM61364v1

Download annotations/find similar RTs

Seq: BAJJ01000036.1 Bacteroides barnesiae DSM 18169 = JCM 13652 DNA, contig: JCM13652.contig00036, whole genome shotgun sequence (5546 bp)
Overview 1 RT 1: 2884-5531 bp Neighborhood of RT #1 [2884, 5545] RVT-GII RVT-GII GIIM PDDEXK_9 Feature: gene Location: 2884-3060 bp Feature: gene Location: 3064-3213 bp Feature: gene Location: 3239-3958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575-3935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575-3935 bp Feature: gene Location: 3967-4200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3970-4192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3970-41 92 bp Feature: gene Location: 4273-4641 bp Feature: domain Description: GIIM Note: maturase Location: 4279-4480 bp Feature: domain Description: GIIM Note: maturase Location: 4279-4480 bp Feature: gene Location: 4952-5545 bp Feature: domain Description: PDDEXK_9 Location: 5255-5531 bp Feature: domain Description: PDDEXK_9 Location: 5255-5531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PDDEXK_9 (pfam08011)

Seq: BAJJ01000019.1 Bacteroides barnesiae DSM 18169 = JCM 13652 DNA, contig: JCM13652.contig00019, whole genome shotgun sequence (66922 bp)
Overview 1 RT 1: 46957-51908 bp Neighborhood of RT #1 [46957, 51961] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 46957-47130 bp Feature: gene Location: 48473-48658 bp Feature: gene Location: 49402-50280 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 49612-50221 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 49612 -502 2 1 bp Feature: gene Location: 50298-51668 bp Feature: domain Description: Cas1_I-II-III Location: 50670-51630 bp Feature: domain Description: Cas1_I-II-III Location: 50670-51630 bp Feature: gene Location: 51668-51961 bp Feature: domain Description: Cas2_I_II_III Location: 51698-51908 bp Feature: domain Description: Cas2 _I_II_III Location: 51698-51908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: BAJJ01000016.1 Bacteroides barnesiae DSM 18169 = JCM 13652 DNA, contig: JCM13652.contig00016, whole genome shotgun sequence (76880 bp)
Overview 1 RT 1: 69030-71921 bp Neighborhood of RT #1 [69030, 71921] RVT-GII GIIM Feature: gene Location: 69030-69281 bp Feature: gene Location: 69293-69457 bp Feature: gene Location: 69690-70985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69885-70500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69885-70500 bp Feature: domain Description: GIIM Note: maturase Location: 70572-70785 bp Feature: domain Description: GIIM Note: maturase Location: 70572-70785 bp Feature: gene Location: 71328-71531 bp Feature: gene Location: 71565-71921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)