myRT

myRT report for GCA_000615005.1_ASM61500v1

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Seq: BALN01000006.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 DNA, contig: JCM20190.contig00006, whole genome shotgun sequence (194492 bp)
Overview 1 RT 1: 48266-54120 bp Neighborhood of RT #1 [48266, 54120] Na_Pro_sym RVT_N RVT-GII GIIM Feature: gene Location: 48266-49762 bp Feature: domain Description: Na_Pro_sym Location: 48284-49739 bp Feature: domain Description: Na_Pro_sym Location: 48284-49739 bp Feature: gene Location: 49766-49942 bp Feature: gene Location: 50810-52282 bp Feature: RT Description: RVT_N Location: 50858-51101 bp Feature: RT Description: RVT_N Location: 50858-51 1 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51146-51773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 46-51 773 bp Feature: domain Description: GIIM Note: maturase Location: 51830-52058 bp Feature: domain Description: GIIM Note: maturase Location: 51 830-52058 bp Feature: gene Location: 52279-52626 bp Feature: gene Location: 53395-54120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_Pro_sym (TIGR02121), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BALN01000004.1 Shewanella putrefaciens JCM 20190 = NBRC 3908 DNA, contig: JCM20190.contig00004, whole genome shotgun sequence (260999 bp)
Overview 1 RT 1: 72578-76215 bp 2 RT 2: 257420-260314 bp Neighborhood of RT #1 [72578, 76391] DUF4124 RVT-Retrons COG3950 COG3950 Neighborhood of RT #2 [257420, 260997] UPF0167 RVT-GII GIIM HNH_5 Feature: gene Location: 72578-72988 bp Feature: gene Location: 73092-73499 bp Feature: domain Description: DUF4124 Location: 73137-73254 bp Feature: domain Description: DUF412 4 Location: 73137-732 54 bp Feature: gene Location: 73827-74759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73935-74532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73935-74532 bp Feature: gene Location: 74761-75546 bp Feature: domain Description: COG3950 Location: 74947-75400 bp Feature: domain Description: COG3950 Location: 74947-75400 bp Feature: gene Location: 75735-76391 bp Feature: domain Description: COG3950 Location: 75795-76215 bp Feature: domain Description: COG3950 Location: 75795-762 15 bp Feature: gene Location: 257420-257968 bp Feature: domain Description: UPF0167 Location: 257429-257960 bp Feature: domain Description: UPF0167 Location: 2 5742 9-2 57960 bp Feature: gene Location: 258355-258519 bp Feature: gene Location: 258838-259989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258922-259540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5892 2 -2 59540 bp Feature: domain Description: GIIM Note: maturase Location: 259588-259792 bp Feature: domain Description: GIIM Note: maturase Location: 2 59588-2 59792 bp Feature: gene Location: 260071-260997 bp Feature: domain Description: HNH_5 Location: 260122-260314 bp Feature: domain Description: HNH_5 Location: 2 6012 2 -2 60314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4124 (pfam13511), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), UPF0167 (pfam03691), RVT-GII, GIIM (pfam08388), HNH_5 (pfam14279)