myRT

myRT report for GCA_000615615.1_ASM61561v1

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Seq: BAME01000188.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00188, whole genome shotgun sequence (2407 bp)
Overview 1 RT 1: 382-2225 bp Neighborhood of RT #1 [382, 2225] RVT_N RVT-GII GIIM Feature: gene Location: 382-1800 bp Feature: domain Description: RVT_N Location: 454-694 bp Feature: domain Description: RVT_N Location: 454-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1 396 bp Feature: domain Description: GIIM Note: maturase Location: 1450-1591 bp Feature: domain Description: GIIM Note: maturase Location: 1 450-1 591 bp Feature: gene Location: 1866-2225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BAME01000183.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00183, whole genome shotgun sequence (2918 bp)
Overview 1 RT 1: 2-2775 bp Neighborhood of RT #1 [2, 2804] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-445 bp Feature: gene Location: 844-981 bp Feature: gene Location: 987-2804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254-2076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 54-2 076 bp Feature: domain Description: Intron_maturas2 Location: 2217-2454 bp Feature: domain Description: Intron_maturas2 Location: 2 2 17-2 454 bp Feature: domain Description: HNHc Note: nucleases Location: 2625-2775 bp Feature: domain Description: HNHc Note: nucleases Location: 2 62 5-2 775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAME01000087.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00087, whole genome shotgun sequence (28897 bp)
Overview 1 RT 1: 16846-19917 bp Neighborhood of RT #1 [16846, 19961] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 16846-16977 bp Feature: domain Description: DUF4134 Location: 16864-16972 bp Feature: domain Description: DUF413 4 Location: 16864-16972 bp Feature: gene Location: 17193-17345 bp Feature: gene Location: 17508-19340 bp Feature: domain Description: RVT_N Location: 17703-17946 bp Feature: domain Description: RVT_N Location: 17703 -17946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17991-18651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17991-18651 bp Feature: domain Description: GIIM Note: maturase Location: 18708-18942 bp Feature: domain Description: GIIM Note: maturase Location: 18708-18942 bp Feature: gene Location: 19337-19627 bp Feature: domain Description: DUF4134 Location: 19460-19622 bp Feature: domain Description: DUF413 4 Location: 19460-19622 bp Feature: gene Location: 19629-19961 bp Feature: domain Description: DUF4133 Location: 19647-19917 bp Feature: domain Description: DUF413 3 Location: 19647-19917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: BAME01000052.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00052, whole genome shotgun sequence (54321 bp)
Overview 1 RT 1: 8825-13121 bp Neighborhood of RT #1 [8825, 13121] RVT-DGRs Avd_like Feature: gene Location: 8825-9496 bp Feature: gene Location: 9630-10013 bp Feature: gene Location: 10050-11375 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10227-10929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10227-10929 bp Feature: gene Location: 11678-12058 bp Feature: domain Description: Avd_like Location: 11705-12014 bp Feature: domain Description: Avd_like Location: 11705-12014 bp Feature: gene Location: 12255-13121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: BAME01000043.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00043, whole genome shotgun sequence (59731 bp)
Overview 1 RT 1: 46880-51406 bp Neighborhood of RT #1 [46880, 51406] RVT-DGRs Feature: gene Location: 46880-48349 bp Feature: gene Location: 48448-48720 bp Feature: gene Location: 49041-50582 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49152-49890 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4915 2-49890 bp Feature: gene Location: 50579-50980 bp Feature: gene Location: 51164-51406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BAME01000039.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00039, whole genome shotgun sequence (60717 bp)
Overview 1 RT 1: 49624-54864 bp Neighborhood of RT #1 [49624, 54932] RVT-UG27 RPC10 PcfJ Feature: gene Location: 49624-50646 bp Feature: gene Location: 50670-51128 bp Feature: gene Location: 52028-53317 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52244-52877 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52244-52877 bp Feature: gene Location: 53292-53603 bp Feature: gene Location: 53616-54932 bp Feature: domain Description: RPC10 Location: 53751-53859 bp Feature: domain Description: RPC10 Location: 53751-53859 bp Feature: domain Description: PcfJ Location: 54384-54864 bp Feature: domain Description: PcfJ Location: 54384-5486 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, RPC10 (COG1996), PcfJ (pfam14284)

Seq: BAME01000017.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00017, whole genome shotgun sequence (99406 bp)
Overview 1 RT 1: 93040-99400 bp Neighborhood of RT #1 [93040, 99405] YjbH VirE_N RVT-UG28b AAA-ATPase_like PDDEXK_9 SSL2 Feature: gene Location: 93040-93849 bp Feature: domain Description: YjbH Location: 93103-93556 bp Feature: domain Description: YjbH Location: 93103-93556 bp Feature: gene Location: 93870-94889 bp Feature: domain Description: VirE_N Location: 94071-94434 bp Feature: domain Description: VirE_N Location: 9407 1-94434 bp Feature: gene Location: 95003-96778 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 95432-96182 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 95432-96182 bp Feature: gene Location: 97177-98745 bp Feature: domain Description: AAA-ATPase_like Location: 97207-98038 bp Feature: domain Description: AAA-ATPase_like Location: 97 207 -98038 bp Feature: domain Description: PDDEXK_9 Location: 98458-98731 bp Feature: domain Description: PDDEXK_9 Location: 98458-987 31 bp Feature: gene Location: 98851-99405 bp Feature: domain Description: SSL2 Location: 98920-99400 bp Feature: domain Description: SSL2 Location: 98920-99400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbH (pfam06082), VirE_N (pfam08800), RVT-UG28b, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), SSL2 (COG1061)

Seq: BAME01000006.1 Porphyromonas bennonis DSM 23058 = JCM 16335 DNA, contig: JCM16335.contig00006, whole genome shotgun sequence (130218 bp)
Overview 1 RT 1: 97546-102315 bp Neighborhood of RT #1 [97546, 102315] Prophage_tail RVT-DGRs Feature: gene Location: 97546-98847 bp Feature: domain Description: Prophage_tail Location: 97843-98101 bp Feature: domain Description: Prophage_tail Location: 978 43-98 101 bp Feature: gene Location: 98853-99260 bp Feature: gene Location: 99372-100544 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99591-100179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99591-100179 bp Feature: gene Location: 100732-100956 bp Feature: gene Location: 100978-102315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), RVT-DGRs