myRT

myRT report for GCA_000615645.1_ASM61564v1

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Seq: BAMF01000101.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00101, whole genome shotgun sequence (2411 bp)
Overview 1 RT 1: 186-1910 bp Neighborhood of RT #1 [186, 2293] RVT_N RVT-GII GIIM Feature: gene Location: 186-545 bp Feature: gene Location: 611-2293 bp Feature: domain Description: RVT_N Location: 683-923 bp Feature: domain Description: RVT_N Location: 683-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971-1625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 -1 625 bp Feature: domain Description: GIIM Note: maturase Location: 1679-1910 bp Feature: domain Description: GIIM Note: maturase Location: 1 679-1 91 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BAMF01000098.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00098, whole genome shotgun sequence (2920 bp)
Overview 1 RT 1: 2-2777 bp Neighborhood of RT #1 [2, 2806] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-445 bp Feature: gene Location: 846-983 bp Feature: gene Location: 989-2806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 56-2 078 bp Feature: domain Description: Intron_maturas2 Location: 2219-2456 bp Feature: domain Description: Intron_maturas2 Location: 2 2 19-2 456 bp Feature: domain Description: HNHc Note: nucleases Location: 2627-2777 bp Feature: domain Description: HNHc Note: nucleases Location: 2 62 7-2 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAMF01000075.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00075, whole genome shotgun sequence (11831 bp)
Overview 1 RT 1: 8704-11830 bp Neighborhood of RT #1 [8704, 11830] RVT-DGRs Feature: gene Location: 8704-8946 bp Feature: gene Location: 9130-9531 bp Feature: gene Location: 9528-11168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9738-10476 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 973 8-10476 bp Feature: gene Location: 11190-11573 bp Feature: gene Location: 11612-11830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BAMF01000037.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00037, whole genome shotgun sequence (54332 bp)
Overview 1 RT 1: 41210-45505 bp Neighborhood of RT #1 [41210, 45505] Avd_like RVT-DGRs Feature: gene Location: 41210-42190 bp Feature: gene Location: 42272-42652 bp Feature: domain Description: Avd_like Location: 42299-42608 bp Feature: domain Description: Avd_like Location: 4 2299-4 2608 bp Feature: gene Location: 42955-44280 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43132-43834 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 3132-4 3834 bp Feature: gene Location: 44317-44700 bp Feature: gene Location: 44834-45505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: BAMF01000033.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00033, whole genome shotgun sequence (60714 bp)
Overview 1 RT 1: 49616-54856 bp Neighborhood of RT #1 [49616, 54924] RVT-UG27 RPC10 PcfJ Feature: gene Location: 49616-50638 bp Feature: gene Location: 50662-51120 bp Feature: gene Location: 52020-53309 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 52236-52869 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 5 2236-5 2869 bp Feature: gene Location: 53284-53595 bp Feature: gene Location: 53608-54924 bp Feature: domain Description: RPC10 Location: 53743-53851 bp Feature: domain Description: RPC10 Location: 5 3743-5 385 1 bp Feature: domain Description: PcfJ Location: 54376-54856 bp Feature: domain Description: PcfJ Location: 5 4376-5 485 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, RPC10 (COG1996), PcfJ (pfam14284)

Seq: BAMF01000030.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00030, whole genome shotgun sequence (69377 bp)
Overview 1 RT 1: 8940-12052 bp Neighborhood of RT #1 [8940, 12057] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 8940-9272 bp Feature: domain Description: DUF4133 Location: 8958-9228 bp Feature: domain Description: DUF4133 Location: 8958-9228 bp Feature: gene Location: 9274-9564 bp Feature: domain Description: DUF4134 Location: 9397-9559 bp Feature: domain Description: DUF4134 Location: 9397-9559 bp Feature: gene Location: 9561-11393 bp Feature: domain Description: RVT_N Location: 9756-9999 bp Feature: domain Description: RVT_N Location: 9756 -9999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10044-10704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10044-10704 bp Feature: domain Description: GIIM Note: maturase Location: 10761-10995 bp Feature: domain Description: GIIM Note: maturase Location: 1076 1-10995 bp Feature: gene Location: 11640-11897 bp Feature: gene Location: 11926-12057 bp Feature: domain Description: DUF4134 Location: 11944-12052 bp Feature: domain Description: DUF4134 Location: 11944-12052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BAMF01000018.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00018, whole genome shotgun sequence (99473 bp)
Overview 1 RT 1: 92388-98078 bp Neighborhood of RT #1 [92388, 98092] YjbH VirE_N RVT-UG28b AAA-ATPase_like PDDEXK_9 Feature: gene Location: 92388-93197 bp Feature: domain Description: YjbH Location: 92451-92904 bp Feature: domain Description: YjbH Location: 92451-92904 bp Feature: gene Location: 93218-94237 bp Feature: domain Description: VirE_N Location: 93419-93782 bp Feature: domain Description: VirE_N Location: 93419-937 82 bp Feature: gene Location: 94351-96126 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 94780-95530 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 947 80-95530 bp Feature: gene Location: 96525-97643 bp Feature: domain Description: AAA-ATPase_like Location: 96555-97386 bp Feature: domain Description: AAA-ATPase_like Location: 96555-97 386 bp Feature: gene Location: 97643-98092 bp Feature: domain Description: PDDEXK_9 Location: 97805-98078 bp Feature: domain Description: PDDEXK_9 Location: 97 805-9807 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbH (pfam06082), VirE_N (pfam08800), RVT-UG28b, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: BAMF01000005.1 Bacteroides sartorii JCM 16497 DNA, contig: JCM16497.contig00005, whole genome shotgun sequence (178832 bp)
Overview 1 RT 1: 143877-150949 bp Neighborhood of RT #1 [143877, 150949] Prophage_tail Prophage_tail RVT-DGRs Feature: gene Location: 143877-147482 bp Feature: domain Description: Prophage_tail Location: 144177-144432 bp Feature: domain Description: Prophage_tail Location: 144177-144432 bp Feature: domain Description: Prophage_tail Location: 145077-145320 bp Feature: domain Description: Prophage_tail Location: 145077-145320 bp Feature: gene Location: 147488-147895 bp Feature: gene Location: 148007-149179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148226-148814 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148 226-148 8 14 bp Feature: gene Location: 149366-149590 bp Feature: gene Location: 149612-150949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), RVT-DGRs