myRT

myRT report for GCA_000616225.2_Ec2011C-3500

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Seq: JHLT01000066.1 Escherichia coli O121:H19 str. 2011C-3500 contig66, whole genome shotgun sequence (68409 bp)
Overview 1 RT 1: 45975-50414 bp 2 RT 2: 53209-58670 bp Neighborhood of RT #1 [45975, 50414] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [53209, 58684] PRK13699 DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 45975-46208 bp Feature: domain Description: DUF905 Location: 46005-46203 bp Feature: domain Description: DUF905 Location: 46005-46203 bp Feature: gene Location: 46266-46706 bp Feature: domain Description: PRK13732 Location: 46269-46704 bp Feature: domain Description: PRK1 3732 Location: 46269-46704 bp Feature: gene Location: 46901-48802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47168-47999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 68-47999 bp Feature: domain Description: Intron_maturas2 Location: 48113-48371 bp Feature: domain Description: Intron_maturas2 Location: 481 1 3-48371 bp Feature: domain Description: HNHc Note: nucleases Location: 48545-48707 bp Feature: domain Description: HNHc Note: nucleases Location: 48545-48707 bp Feature: gene Location: 49838-50152 bp Feature: gene Location: 50223-50414 bp Feature: gene Location: 53209-53892 bp Feature: domain Description: PRK13699 Location: 53212-53890 bp Feature: domain Description: PRK1 3699 Location: 5321 2-53890 bp Feature: gene Location: 54276-55178 bp Feature: domain Description: DUF1281 Location: 54345-54873 bp Feature: domain Description: DUF1 281 Location: 54345-54873 bp Feature: domain Description: DUF1281_C Location: 54879-55119 bp Feature: domain Description: DUF1 281 _C Location: 54879-551 1 9 bp Feature: gene Location: 55255-56979 bp Feature: RT Description: RVT_N Location: 55312-55549 bp Feature: RT Description: RVT_N Location: 5531 2-55549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55600-56248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55600-56248 bp Feature: domain Description: YkfC Location: 56380-56536 bp Feature: domain Description: YkfC Location: 56380-56536 bp Feature: domain Description: HNHc Note: nucleases Location: 56764-56923 bp Feature: domain Description: HNHc Note: nucleases Location: 56764-56923 bp Feature: gene Location: 58002-58250 bp Feature: domain Description: DinI Location: 58059-58239 bp Feature: domain Description: DinI Location: 58059-58239 bp Feature: gene Location: 58247-58684 bp Feature: domain Description: PRK10276 Location: 58304-58670 bp Feature: domain Description: PRK1 0276 Location: 58304-58670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), YkfC (COG3344)
DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JHLT01000085.1 Escherichia coli O121:H19 str. 2011C-3500 contig85, whole genome shotgun sequence (12887 bp)
Overview 1 RT 1: 5333-11336 bp Neighborhood of RT #1 [5333, 11336] Pat_hypo_Ecoli_Z1214_like RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 5333-6403 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 5360-6275 bp Feature: domain Description: Pat_hypo_Ecoli_Z12 14_like Location: 5360-62 75 bp Feature: gene Location: 7231-7641 bp Feature: gene Location: 8754-10532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9015-9810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9015-9810 bp Feature: domain Description: Intron_maturas2 Location: 9936-10161 bp Feature: domain Description: Intron_maturas2 Location: 9936-10161 bp Feature: domain Description: HNHc Note: nucleases Location: 10356-10506 bp Feature: domain Description: HNHc Note: nucleases Location: 10356-10506 bp Feature: gene Location: 10678-11091 bp Feature: domain Description: DUF932 Location: 10681-11056 bp Feature: domain Description: DUF932 Location: 10681-11056 bp Feature: gene Location: 11091-11336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), Pat_hypo_Ecoli_Z1214_like (cd07209), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)