myRT

myRT report for GCA_000617745.1_Ec2010C-4529

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Seq: JHNB01000093.1 Escherichia coli O103:H25 str. 2010C-4529 contig93, whole genome shotgun sequence (5611 bp)
Overview 1 RT 1: 1-5566 bp Neighborhood of RT #1 [1, 5611] YeeP AidA AidA RVT-GII Intron_maturas2 Feature: gene Location: 1-255 bp Feature: domain Description: YeeP Location: 7-253 bp Feature: domain Description: YeeP Location: 7-253 bp Feature: gene Location: 625-3471 bp Feature: domain Description: AidA Location: 664-2626 bp Feature: domain Description: AidA Location: 664-2626 bp Feature: domain Description: AidA Location: 2665-3073 bp Feature: domain Description: AidA Location: 2665-3073 bp Feature: gene Location: 4693-5611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-5218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-521 8 bp Feature: domain Description: Intron_maturas2 Location: 5344-5566 bp Feature: domain Description: Intron_maturas2 Location: 5344-5566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), AidA (COG3468)

Seq: JHNB01000081.1 Escherichia coli O103:H25 str. 2010C-4529 contig81, whole genome shotgun sequence (491899 bp)
Overview 1 RT 1: 485712-490831 bp Neighborhood of RT #1 [485712, 490831] PRK15047 RutF RVT-GII GIIM Feature: gene Location: 485712-486557 bp Feature: domain Description: PRK15047 Location: 485715-486555 bp Feature: domain Description: PRK15047 Location: 485715-486555 bp Feature: gene Location: 486732-487301 bp Feature: domain Description: RutF Location: 486786-487290 bp Feature: domain Description: RutF Location: 486786-4872 90 bp Feature: gene Location: 487596-488918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487872-488529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487872 -48852 9 bp Feature: domain Description: GIIM Note: maturase Location: 488613-488823 bp Feature: domain Description: GIIM Note: maturase Location: 488613-48882 3 bp Feature: gene Location: 489444-489788 bp Feature: gene Location: 490433-490831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15047 (N-hydroxyarylamine O-acetyltransferase; Provisional), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: JHNB01000082.1 Escherichia coli O103:H25 str. 2010C-4529 contig82, whole genome shotgun sequence (116561 bp)
Overview 1 RT 1: 33540-39544 bp Neighborhood of RT #1 [33540, 39544] Pat_hypo_Ecoli_Z1214_like RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 33540-34610 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 33567-34482 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 3 3 567-3 4482 bp Feature: gene Location: 35439-35849 bp Feature: gene Location: 36962-38740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37223-38018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7223 -3 8018 bp Feature: domain Description: Intron_maturas2 Location: 38144-38369 bp Feature: domain Description: Intron_maturas2 Location: 3 8144-3 83 69 bp Feature: domain Description: HNHc Note: nucleases Location: 38564-38714 bp Feature: domain Description: HNHc Note: nucleases Location: 3 8564-3 8714 bp Feature: gene Location: 38886-39299 bp Feature: domain Description: DUF932 Location: 38889-39264 bp Feature: domain Description: DUF93 2 Location: 3 8889-3 9264 bp Feature: gene Location: 39299-39544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pat_hypo_Ecoli_Z1214_like (cd07209), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067)