myRT

myRT report for GCA_000617845.2_ASM61784v2

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Seq: DF820425.1 Bradyrhizobium sp. DOA9 DNA, scaffold: Scaffold2, whole genome shotgun sequence (7114464 bp)
Overview 1 RT 1: 1663219-1670479 bp 2 RT 2: 3141906-3147218 bp Neighborhood of RT #1 [1663219, 1670520] DUF2235 HATPase_c_3 RVT-UG7 RpmB DUF3108 Neighborhood of RT #2 [3141906, 3147232] HflB RVT-GII GIIM MarR Feature: gene Location: 1663219-1664607 bp Ori: GAJ32329.1 Feature: domain Description: DUF2235 Location: 1663261-1664149 bp Feature: domain Description: DUF2235 Location: 1 663261 -1 6641 49 bp Feature: gene Location: 1664997-1666934 bp Ori: GAJ32330.1 Feature: domain Description: HATPase_c_3 Location: 1665084-1665423 bp Feature: domain Description: HATPase_c_3 Location: 1 665084-1 665423 bp Feature: gene Location: 1667022-1668602 bp Ori: GAJ32331.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1667430-1667835 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 667430-1 667835 bp Feature: gene Location: 1668863-1669171 bp Ori: GAJ32332.1 Feature: domain Description: RpmB Location: 1668866-1669082 bp Feature: domain Description: RpmB Location: 1 668866-1 669082 bp Feature: gene Location: 1669702-1670520 bp Ori: GAJ32333.1 Feature: domain Description: DUF3108 Location: 1669744-1670479 bp Feature: domain Description: DUF31 08 Location: 1 669744-1 670479 bp Feature: gene Location: 3141906-3142277 bp Feature: gene Location: 3142285-3144222 bp Ori: GAJ33703.1 Feature: domain Description: HflB Location: 3142423-3144196 bp Feature: domain Description: HflB Location: 31 42423-31 441 96 bp Feature: gene Location: 3144979-3146235 bp Ori: GAJ33704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145174-3145792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 451 74-31 45792 bp Feature: domain Description: GIIM Note: maturase Location: 3145843-3146053 bp Feature: domain Description: GIIM Note: maturase Location: 31 45843-31 46053 bp Feature: gene Location: 3146311-3146670 bp Feature: gene Location: 3146759-3147232 bp Ori: GAJ33706.1 Feature: domain Description: MarR Location: 3146885-3147218 bp Feature: domain Description: MarR Location: 31 46885-31 4721 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), HATPase_c_3 (pfam13589), RVT-UG7, RpmB (COG0227), DUF3108 (pfam11306), HflB (COG0465), RVT-GII, GIIM (pfam08388), MarR (pfam01047)

Seq: DF820426.1 Bradyrhizobium sp. DOA9 DNA, scaffold: Contig14078, whole genome shotgun sequence (736085 bp)
Overview 1 RT 1: 430097-438270 bp 2 RT 2: 460674-467071 bp 3 RT 3: 723644-728415 bp Neighborhood of RT #1 [430097, 438440] ALDH_F5_SSADH_GabD DUF772 RVT-GII COG3547 Transposase_mut Neighborhood of RT #2 [460674, 467094] PHA02517 PHA02517 RVT-GII GIIM Nif11 rSAM_PoyD Neighborhood of RT #3 [723644, 728564] RVT-GII IS285 Transposase_mut Feature: gene Location: 430097-431542 bp Ori: GAJ37784.1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 430181-431525 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 430181-43152 5 bp Feature: gene Location: 432959-433717 bp Ori: GAJ37785.1 Feature: domain Description: DUF772 Location: 433118-433334 bp Feature: domain Description: DUF772 Location: 433118-433334 bp Feature: gene Location: 433564-434973 bp Ori: GAJ37786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433918-434608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433918-434608 bp Feature: gene Location: 435991-437133 bp Ori: GAJ37787.1 Feature: domain Description: COG3547 Location: 436042-436870 bp Feature: domain Description: COG3547 Location: 436042 -436870 bp Feature: gene Location: 437274-438440 bp Ori: GAJ37788.1 Feature: domain Description: Transposase_mut Location: 437283-438270 bp Feature: domain Description: Transposase_mut Location: 4372 83-4382 70 bp Feature: gene Location: 460674-461153 bp Ori: GAJ37814.1 Feature: domain Description: PHA02517 Location: 460695-460929 bp Feature: domain Description: PHA02 517 Location: 460695-46092 9 bp Feature: gene Location: 460870-461178 bp Ori: GAJ37815.1 Feature: domain Description: PHA02517 Location: 460927-461137 bp Feature: domain Description: PHA02 517 Location: 46092 7-461137 bp Feature: gene Location: 461933-463189 bp Ori: GAJ37816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462128-462746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 12 8-462 746 bp Feature: domain Description: GIIM Note: maturase Location: 462797-463007 bp Feature: domain Description: GIIM Note: maturase Location: 462 797-463007 bp Feature: gene Location: 465175-465528 bp Ori: GAJ37817.1 Feature: domain Description: Nif11 Location: 465178-465319 bp Feature: domain Description: Nif11 Location: 465178-465319 bp Feature: gene Location: 465601-467094 bp Ori: GAJ37818.1 Feature: domain Description: rSAM_PoyD Location: 465727-467071 bp Feature: domain Description: rSAM_PoyD Location: 46572 7-467071 bp Feature: gene Location: 723644-724084 bp Feature: gene Location: 724328-725125 bp Feature: gene Location: 725702-727111 bp Ori: GAJ38045.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726056-726746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 6056-72 6746 bp Feature: gene Location: 727714-728148 bp Ori: GAJ38046.1 Feature: domain Description: IS285 Location: 727720-728143 bp Feature: domain Description: IS2 85 Location: 72 772 0-72 8143 bp Feature: gene Location: 728127-728564 bp Ori: GAJ38047.1 Feature: domain Description: Transposase_mut Location: 728145-728415 bp Feature: domain Description: Transposase_mut Location: 72 8145-72 8415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F5_SSADH_GabD (cd07103), DUF772 (pfam05598), RVT-GII, COG3547 (Transposase ), Transposase_mut (pfam00872), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), Nif11 (pfam07862), rSAM_PoyD (TIGR04517), IS285 (COG3328)