myRT

myRT report for GCA_000619945.1_ASM61994v1

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Seq: JHVC01000003.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00003.3_C, whole genome shotgun sequence (314562 bp)
Overview 1 RT 1: 7941-12514 bp Neighborhood of RT #1 [7941, 12759] VOC_like RVT-UG2 RVT-UG2 HNH_4 Feature: gene Location: 7941-8279 bp Feature: domain Description: VOC_like Location: 7947-8268 bp Feature: domain Description: VOC_like Location: 7947-8268 bp Feature: gene Location: 8459-8716 bp Feature: gene Location: 8854-9312 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 8857-9145 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 8857-91 45 bp Feature: gene Location: 9422-10048 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9605-10016 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9605-1 001 6 bp Feature: gene Location: 10416-11573 bp Feature: gene Location: 11587-12759 bp Feature: domain Description: HNH_4 Location: 12361-12514 bp Feature: domain Description: HNH_4 Location: 1 2361 -1 251 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT-UG2, HNH_4 (pfam13395)

Seq: JHVC01000007.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00006.6_C, whole genome shotgun sequence (251919 bp)
Overview 1 RT 1: 79800-84723 bp Neighborhood of RT #1 [79800, 84971] ABC2_membrane_5 RVT-GII GIIM UPF0236 Feature: gene Location: 79800-80456 bp Feature: domain Description: ABC2_membrane_5 Location: 79818-80439 bp Feature: domain Description: ABC2 _membrane_5 Location: 79818-80439 bp Feature: gene Location: 80461-80868 bp Feature: gene Location: 81651-82940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81948-82581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81948-82 581 bp Feature: domain Description: GIIM Note: maturase Location: 82662-82875 bp Feature: domain Description: GIIM Note: maturase Location: 82 662 -82 875 bp Feature: gene Location: 83038-83184 bp Feature: gene Location: 83478-84971 bp Feature: domain Description: UPF0236 Location: 83505-84723 bp Feature: domain Description: UPF02 36 Location: 83505-8472 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane_5 (pfam13346), RVT-GII, GIIM (pfam08388), UPF0236 (pfam06782)

Seq: JHVC01000013.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00012.12_C, whole genome shotgun sequence (111096 bp)
Overview 1 RT 1: 43140-46945 bp Neighborhood of RT #1 [43140, 47445] MurNAc-LAA spore_SleB RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 43140-43469 bp Feature: gene Location: 43533-44390 bp Feature: domain Description: MurNAc-LAA Location: 43539-44043 bp Feature: domain Description: MurNAc-LAA Location: 43 53 9-44043 bp Feature: domain Description: spore_SleB Location: 44196-44379 bp Feature: domain Description: spore_SleB Location: 44196-443 79 bp Feature: gene Location: 44435-45544 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44651-45302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44651-453 02 bp Feature: gene Location: 45841-46206 bp Feature: domain Description: Avd_like Location: 45889-46195 bp Feature: domain Description: Avd_like Location: 45889-46195 bp Feature: gene Location: 46315-47445 bp Feature: domain Description: FGE-sulfatase Location: 46567-46945 bp Feature: domain Description: FGE-sulfatase Location: 46567-46945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurNAc-LAA (cl02713), spore_SleB (TIGR02869), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: JHVC01000050.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00048.48_C, whole genome shotgun sequence (2086 bp)
Overview 1 RT 1: 205-1752 bp Neighborhood of RT #1 [205, 1752] RVT-GII Feature: gene Location: 205-1494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 60-114 4 bp Feature: gene Location: 1501-1752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII