myRT

myRT report for GCA_000620125.1_ASM62012v1

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Seq: JHVL01000053.1 Clostridiisalibacter paucivorans DSM 22131 Q326DRAFT_scaffold00047.47_C, whole genome shotgun sequence (25529 bp)
Overview 1 RT 1: 11872-21742 bp Neighborhood of RT #1 [11872, 21861] Ser_Recombinase RVT-GII RVT-GII GIIM KOG4768 Resolvase Recombinase Feature: gene Location: 11872-16083 bp Feature: gene Location: 16557-16781 bp Feature: domain Description: Ser_Recombinase Location: 16644-16770 bp Feature: domain Description: Ser_Recombinase Location: 1 6644-1 6770 bp Feature: gene Location: 17295-18251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17562-18222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7562-1 8222 bp Feature: gene Location: 18767-20011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18971-19628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8971 -1 9628 bp Feature: domain Description: GIIM Note: maturase Location: 19709-19937 bp Feature: domain Description: GIIM Note: maturase Location: 1 9709-1 9937 bp Feature: gene Location: 20352-20939 bp Feature: domain Description: KOG4768 Location: 20361-20934 bp Feature: domain Description: KOG4768 Location: 20361 -20934 bp Feature: gene Location: 21100-21861 bp Feature: domain Description: Resolvase Location: 21106-21355 bp Feature: domain Description: Resolvase Location: 21 1 06-21 355 bp Feature: domain Description: Recombinase Location: 21424-21742 bp Feature: domain Description: Recombinase Location: 21 424-21 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ser_Recombinase (cl02788), RVT-GII, GIIM (pfam08388), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Resolvase (smart00857), Recombinase (pfam07508)

Seq: JHVL01000054.1 Clostridiisalibacter paucivorans DSM 22131 Q326DRAFT_scaffold00048.48_C, whole genome shotgun sequence (24808 bp)
Overview 1 RT 1: 4005-10178 bp Neighborhood of RT #1 [4005, 10195] UPF0236 RVT-Retrons HsdM RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Feature: gene Location: 4005-4466 bp Feature: domain Description: UPF0236 Location: 4023-4443 bp Feature: domain Description: UPF02 36 Location: 402 3-4443 bp Feature: gene Location: 4644-4928 bp Feature: gene Location: 5125-6807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5251-5851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 51-5851 bp Feature: gene Location: 7540-8991 bp Feature: domain Description: HsdM Location: 7555-8947 bp Feature: domain Description: HsdM Location: 7555-8947 bp Feature: gene Location: 8993-10195 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 9320-9593 bp Feature: domain Description: RMtype1_S_Ppo2 1ORF8840P_TRD1-CR1_like Location: 932 0-9593 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 9635-10178 bp Feature: domain Description: RMtype1_S_Ppo2 1ORF8840P_TRD1-CR1_like Location: 9635-10178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), RVT-Retrons, HsdM (COG0286), RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like (cd17293)