myRT

myRT report for GCA_000620425.1_ASM62042v1

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Seq: KK211137.1 Teredinibacter turnerae 1133Y.S.0a.04 strain 1133Y.S.0a.4 genomic scaffold K255DRAFT_scaffold00001.1, whole genome shotgun sequence (3157383 bp)
Overview 1 RT 1: 273529-282025 bp 2 RT 2: 365314-369818 bp 3 RT 3: 1489190-1492924 bp 4 RT 4: 2540988-2544206 bp 5 RT 5: 2945658-2950520 bp Neighborhood of RT #1 [273529, 282025] Cas10_III Cmr1 CRISPR_Cas6 RVT-CRISPR Neighborhood of RT #2 [365314, 369818] COG3547 Pentapeptide Pentapeptide RVT-GII GIIM Neighborhood of RT #3 [1489190, 1492924] RVT-UG7 Tae4 Neighborhood of RT #4 [2540988, 2544229] RVT-GII GIIM ANK Neighborhood of RT #5 [2945658, 2950543] SIR2-like RVT-UG28 COG3666 DDE_Tnp_1_6 Feature: gene Location: 273529-275334 bp Feature: domain Description: Cas10_III Location: 273544-274948 bp Feature: domain Description: Cas1 0_III Location: 273544-274948 bp Feature: gene Location: 275340-276755 bp Feature: domain Description: Cmr1 Location: 275430-276471 bp Feature: domain Description: Cmr1 Location: 275430-276471 bp Feature: gene Location: 277201-279222 bp Feature: domain Description: CRISPR_Cas6 Location: 277765-278059 bp Feature: domain Description: CRISPR_Cas6 Location: 277765-278059 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 278392-278929 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 278392-278929 bp Feature: gene Location: 281163-281660 bp Feature: gene Location: 281804-282025 bp Feature: gene Location: 365314-366261 bp Feature: domain Description: COG3547 Location: 365350-366253 bp Feature: domain Description: COG3547 Location: 365350-366253 bp Feature: gene Location: 366300-367409 bp Feature: domain Description: Pentapeptide Location: 366621-366723 bp Feature: domain Description: Pentapeptide Location: 366621 -366723 bp Feature: domain Description: Pentapeptide Location: 366741-366825 bp Feature: domain Description: Pentapeptide Location: 366741 -366825 bp Feature: gene Location: 367531-368835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367801-368419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367801 -36841 9 bp Feature: domain Description: GIIM Note: maturase Location: 368473-368698 bp Feature: domain Description: GIIM Note: maturase Location: 368473-368698 bp Feature: gene Location: 369115-369303 bp Feature: gene Location: 369327-369818 bp Feature: gene Location: 1489190-1489384 bp Feature: gene Location: 1489567-1489941 bp Feature: gene Location: 1490039-1491619 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1490459-1490852 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 490459-1 490852 bp Feature: gene Location: 1492094-1492582 bp Feature: domain Description: Tae4 Location: 1492214-1492571 bp Feature: domain Description: Tae4 Location: 1 49221 4-1 492571 bp Feature: gene Location: 1492583-1492924 bp Feature: gene Location: 2540988-2541200 bp Feature: gene Location: 2541279-2541446 bp Feature: gene Location: 2541997-2543316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2542252-2542918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2542252-254291 8 bp Feature: domain Description: GIIM Note: maturase Location: 2543014-2543215 bp Feature: domain Description: GIIM Note: maturase Location: 254301 4-254321 5 bp Feature: gene Location: 2543380-2543739 bp Feature: gene Location: 2543867-2544229 bp Feature: domain Description: ANK Location: 2543939-2544206 bp Feature: domain Description: ANK Location: 2543939-2544206 bp Feature: gene Location: 2945658-2946119 bp Feature: gene Location: 2946226-2947062 bp Feature: domain Description: SIR2-like Location: 2946319-2946970 bp Feature: domain Description: SIR2-like Location: 294631 9-2946970 bp Feature: gene Location: 2947363-2948859 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2947648-2948287 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2947648-2948287 bp Feature: gene Location: 2949045-2949476 bp Feature: domain Description: COG3666 Location: 2949162-2949474 bp Feature: domain Description: COG3666 Location: 29491 62-2949474 bp Feature: gene Location: 2949569-2950543 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2950136-2950520 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 29501 36-2950520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas10_III (cl21742), Cmr1 (COG1367), CRISPR_Cas6 (pfam10040), RVT-CRISPR, COG3547 (Transposase ), Pentapeptide (pfam00805), RVT-GII, GIIM (pfam08388), RVT-UG7, Tae4 (pfam14113)
ANK (smart00248), SIR2-like (cd01406), RVT-UG28, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: KK211138.1 Teredinibacter turnerae 1133Y.S.0a.04 strain 1133Y.S.0a.4 genomic scaffold K255DRAFT_scaffold00002.2, whole genome shotgun sequence (1970347 bp)
Overview 1 RT 1: 410377-415659 bp 2 RT 2: 1580709-1585414 bp Neighborhood of RT #1 [410377, 415778] YfmG YfmG RVT-DGRs Hrd YfmG Neighborhood of RT #2 [1580709, 1585437] CRISPR_Cas2 RVT-CRISPR Cas1_I-II-III Cmr6 Cas_Cmr5 Feature: gene Location: 410377-411339 bp Feature: domain Description: YfmG Location: 410518-411196 bp Feature: domain Description: YfmG Location: 410518-411196 bp Feature: gene Location: 411386-411685 bp Feature: domain Description: YfmG Location: 411452-411581 bp Feature: domain Description: YfmG Location: 411452 -411581 bp Feature: gene Location: 411640-412644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 411850-412438 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 411850-412 438 bp Feature: gene Location: 412625-412903 bp Feature: domain Description: Hrd Location: 412664-412865 bp Feature: domain Description: Hrd Location: 412 664-412 865 bp Feature: gene Location: 413100-415778 bp Feature: domain Description: YfmG Location: 415023-415659 bp Feature: domain Description: YfmG Location: 41502 3-415659 bp Feature: gene Location: 1580709-1580987 bp Feature: domain Description: CRISPR_Cas2 Location: 1580718-1580922 bp Feature: domain Description: CRISPR_Cas2 Location: 1580718-158092 2 bp Feature: gene Location: 1580991-1583888 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1582155-1582767 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1582 155-1582 767 bp Feature: domain Description: Cas1_I-II-III Location: 1582941-1583850 bp Feature: domain Description: Cas1_I-II-III Location: 1582 941-1583850 bp Feature: gene Location: 1583888-1585036 bp Feature: domain Description: Cmr6 Location: 1584053-1584758 bp Feature: domain Description: Cmr6 Location: 1584053-1584758 bp Feature: gene Location: 1585033-1585437 bp Feature: domain Description: Cas_Cmr5 Location: 1585063-1585414 bp Feature: domain Description: Cas_Cmr5 Location: 1585063-1585414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd), CRISPR_Cas2 (pfam09827), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6 (COG1604), Cas_Cmr5 (pfam09701)