myRT

myRT report for GCA_000621325.1_ASM62132v1

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Seq: JHYQ01000001.1 Thiothrix lacustris DSM 21227 Q394DRAFT_scaffold00001.1_C, whole genome shotgun sequence (302955 bp)
Overview 1 RT 1: 213300-224602 bp Neighborhood of RT #1 [213300, 224602] RND_mfp AcrB RVT-Retrons WGR_DNA_ligase Feature: gene Location: 213300-214487 bp Feature: domain Description: RND_mfp Location: 213420-214452 bp Feature: domain Description: RND_mfp Location: 21 3420-21 4452 bp Feature: gene Location: 214484-217612 bp Feature: domain Description: AcrB Location: 214487-217571 bp Feature: domain Description: AcrB Location: 21 4487-21 7571 bp Feature: gene Location: 217918-219477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 218455-219064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 8455-21 9064 bp Feature: gene Location: 219474-222971 bp Feature: domain Description: WGR_DNA_ligase Location: 219492-219708 bp Feature: domain Description: WGR_DNA_ligase Location: 21 9492-21 9708 bp Feature: gene Location: 222971-224602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RND_mfp (TIGR01730), AcrB (COG0841), RVT-Retrons, WGR_DNA_ligase (cd07998)

Seq: JHYQ01000015.1 Thiothrix lacustris DSM 21227 Q394DRAFT_scaffold00012.12_C, whole genome shotgun sequence (112232 bp)
Overview 1 RT 1: 73480-78312 bp Neighborhood of RT #1 [73480, 78482] HTH_XRE RVT-Retrons NorD MoxR Feature: gene Location: 73480-74025 bp Feature: gene Location: 74059-74340 bp Feature: domain Description: HTH_XRE Location: 74071-74236 bp Feature: domain Description: HTH_XRE Location: 74071-742 36 bp Feature: gene Location: 74668-75282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74674-75046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74674-75046 bp Feature: gene Location: 75309-77651 bp Feature: domain Description: NorD Location: 76767-77646 bp Feature: domain Description: NorD Location: 76767-77646 bp Feature: gene Location: 77673-78482 bp Feature: domain Description: MoxR Location: 77715-78312 bp Feature: domain Description: MoxR Location: 77715-78312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, NorD (COG4548), MoxR (COG0714)

Seq: KK211259.1 Thiothrix lacustris DSM 21227 genomic scaffold Q394DRAFT_scaffold00030.30, whole genome shotgun sequence (42310 bp)
Overview 1 RT 1: 3208-6203 bp Neighborhood of RT #1 [3208, 6325] DUF820 RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 3208-3432 bp Feature: gene Location: 3435-4037 bp Feature: domain Description: DUF820 Location: 3519-3969 bp Feature: domain Description: DUF820 Location: 3 519-3 969 bp Feature: gene Location: 4146-4973 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4347-4950 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 43 47-4950 bp Feature: gene Location: 4970-5974 bp Feature: domain Description: Cas_Cas1 Location: 4979-5828 bp Feature: domain Description: Cas_Cas1 Location: 4979-5828 bp Feature: gene Location: 5993-6325 bp Feature: domain Description: Cas2_I_II_III Location: 6011-6203 bp Feature: domain Description: Cas2_I_II_III Location: 6011-6203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)