myRT

myRT report for GCA_000621505.1_ASM62150v1

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Seq: KK211292.1 Clostridium cellobioparum ATCC 15832 genomic scaffold T344DRAFT_scaffold00009.9, whole genome shotgun sequence (208504 bp)
Overview 1 RT 1: 112459-116863 bp Neighborhood of RT #1 [112459, 116865] HTH_31 RVT-GII LZ_Tnp_IS66 YesM Feature: gene Location: 112459-112704 bp Feature: domain Description: HTH_31 Location: 112492-112666 bp Feature: domain Description: HTH_31 Location: 1 1 2492-1 1 2666 bp Feature: gene Location: 112822-113091 bp Feature: gene Location: 113724-114302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114057-114231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4057-1 1 4231 bp Feature: gene Location: 114530-114766 bp Feature: domain Description: LZ_Tnp_IS66 Location: 114572-114755 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 4572-1 1 4755 bp Feature: gene Location: 115120-116865 bp Feature: domain Description: YesM Location: 115705-116863 bp Feature: domain Description: YesM Location: 1 1 5705-1 1 6863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_31 (pfam13560), RVT-GII, LZ_Tnp_IS66 (pfam13007), YesM (COG2972)

Seq: JHYD01000027.1 Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 T344DRAFT_scaffold00018.18_C, whole genome shotgun sequence (119091 bp)
Overview 1 RT 1: 5307-10843 bp Neighborhood of RT #1 [5307, 10843] PRK00024 RVT_N RVT-GII GIIM HNH Fb_sc_Fb_sc_Fb_sc_TIGR02172 Feature: gene Location: 5307-5798 bp Feature: domain Description: PRK00024 Location: 5391-5763 bp Feature: domain Description: PRK0002 4 Location: 5391-5763 bp Feature: gene Location: 5871-6176 bp Feature: gene Location: 6800-8617 bp Feature: RT Description: RVT_N Location: 6857-7100 bp Feature: RT Description: RVT_N Location: 6857-7100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7157-7805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7157-7805 bp Feature: domain Description: GIIM Note: maturase Location: 7868-8102 bp Feature: domain Description: GIIM Note: maturase Location: 7868-8102 bp Feature: domain Description: HNH Note: nucleases Location: 8342-8468 bp Feature: domain Description: HNH Note: nucleases Location: 8342 -8468 bp Feature: gene Location: 9380-10189 bp Feature: domain Description: Fb_sc_Fb_sc_Fb_sc_TIGR02172 Location: 9404-9959 bp Feature: domain Description: Fb_sc_Fb_sc_Fb_sc_TIGR02 172 Location: 9404-9959 bp Feature: gene Location: 10493-10843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Fb_sc_Fb_sc_Fb_sc_TIGR02172

Seq: JHYD01000057.1 Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 T344DRAFT_scaffold00045.45_C, whole genome shotgun sequence (30042 bp)
Overview 1 RT 1: 25721-29465 bp Neighborhood of RT #1 [25721, 29686] CBS_pair_HRP1_like SLH SLH SLH Cu_amine_oxidN1 RVT-GII GIIM GIIM Feature: gene Location: 25721-26173 bp Feature: domain Description: CBS_pair_HRP1_like Location: 25769-26105 bp Feature: domain Description: CBS_pair_HRP1_like Location: 25769-26105 bp Feature: gene Location: 26245-28026 bp Feature: domain Description: SLH Location: 26347-26473 bp Feature: domain Description: SLH Location: 263 47-26473 bp Feature: domain Description: SLH Location: 26533-26659 bp Feature: domain Description: SLH Location: 2653 3 -26659 bp Feature: domain Description: SLH Location: 26746-26869 bp Feature: domain Description: SLH Location: 26746-26869 bp Feature: domain Description: Cu_amine_oxidN1 Location: 26932-27025 bp Feature: domain Description: Cu_amine_oxidN1 Location: 2693 2-27025 bp Feature: gene Location: 28250-29686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28478-29102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28478-29102 bp Feature: domain Description: GIIM Note: maturase Location: 29180-29288 bp Feature: domain Description: GIIM Note: maturase Location: 29180-29288 bp Feature: domain Description: GIIM Note: maturase Location: 29363-29465 bp Feature: domain Description: GIIM Note: maturase Location: 293 63 -29465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CBS_pair_HRP1_like (cd04622), SLH (pfam00395), Cu_amine_oxidN1 (pfam07833), RVT-GII, GIIM (pfam08388)