myRT

myRT report for GCA_000621785.1_ASM62178v1

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Seq: KK211346.1 Ruminococcus flavefaciens ND2009 genomic scaffold T488DRAFT_scaffold00001.1, whole genome shotgun sequence (783253 bp)
Overview 1 RT 1: 344931-351492 bp Neighborhood of RT #1 [344931, 351542] PinE RVT_N RVT-GII GIIM COG4646 DEXHc_priA DUF1643 Feature: gene Location: 344931-345188 bp Feature: domain Description: PinE Location: 344946-345180 bp Feature: domain Description: PinE Location: 344946-3451 80 bp Feature: gene Location: 345231-345896 bp Feature: gene Location: 345933-347564 bp Feature: RT Description: RVT_N Location: 345981-346218 bp Feature: RT Description: RVT_N Location: 345981 -34621 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346269-346914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346269-34691 4 bp Feature: domain Description: GIIM Note: maturase Location: 346965-347199 bp Feature: domain Description: GIIM Note: maturase Location: 346965-3471 99 bp Feature: gene Location: 348148-350874 bp Feature: domain Description: COG4646 Location: 348883-350497 bp Feature: domain Description: COG4646 Location: 348883-350497 bp Feature: domain Description: DEXHc_priA Location: 350686-350782 bp Feature: domain Description: DEXHc_priA Location: 350686-350782 bp Feature: gene Location: 350994-351542 bp Feature: domain Description: DUF1643 Location: 351084-351492 bp Feature: domain Description: DUF1 643 Location: 351 084-351 492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class ), DEXHc_priA (cd17929), DUF1643 (pfam07799)

Seq: JHXI01000016.1 Ruminococcus flavefaciens ND2009 T488DRAFT_scaffold00011.11_C, whole genome shotgun sequence (101172 bp)
Overview 1 RT 1: 29067-33345 bp Neighborhood of RT #1 [29067, 33345] RpoE RVT-Retrons Hydrolase_4 Hydrolase_4 Feature: gene Location: 29067-29909 bp Feature: gene Location: 29896-30456 bp Feature: domain Description: RpoE Location: 29935-30439 bp Feature: domain Description: RpoE Location: 2 9935-30439 bp Feature: gene Location: 30785-31762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30932-31484 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30932 -31484 bp Feature: gene Location: 31743-32807 bp Feature: domain Description: Hydrolase_4 Location: 31992-32304 bp Feature: domain Description: Hydrolase_4 Location: 31992 -32 304 bp Feature: domain Description: Hydrolase_4 Location: 32436-32523 bp Feature: domain Description: Hydrolase_4 Location: 32 436-32 52 3 bp Feature: gene Location: 33046-33345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-Retrons, Hydrolase_4 (pfam12146)