myRT

myRT report for GCA_000622285.2_ASM62228v2

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Seq: JDFU02000010.1 Escherichia coli E1140 1140_unitig_10, whole genome shotgun sequence (2924481 bp)
Overview 1 RT 1: 79817-86437 bp 2 RT 2: 1805737-1814794 bp 3 RT 3: 2659916-2664891 bp Neighborhood of RT #1 [79817, 87327] P Q RVT-AbiP2 Phage_GPA Neighborhood of RT #2 [1805737, 1814799] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 Tra5 InsE Neighborhood of RT #3 [2659916, 2664891] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 79817-81589 bp Ori: KEP76790.1 Feature: domain Description: P Location: 79844-81575 bp Feature: domain Description: P Location: 79844-81 575 bp Feature: gene Location: 81589-82623 bp Ori: KEP76791.1 Feature: domain Description: Q Location: 81592-82618 bp Feature: domain Description: Q Location: 81 592-8261 8 bp Feature: gene Location: 83019-84563 bp Ori: KEP76792.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 83436-83889 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 83436-83889 bp Feature: gene Location: 84729-84947 bp Feature: gene Location: 85051-87327 bp Ori: KEP76794.1 Feature: domain Description: Phage_GPA Location: 85450-86437 bp Feature: domain Description: Phage_GPA Location: 85450-86437 bp Feature: gene Location: 1805737-1808304 bp Ori: KEP78340.1 Feature: domain Description: mutS1 Location: 1805773-1808293 bp Feature: domain Description: mutS1 Location: 1 805773-1 808293 bp Feature: gene Location: 1808464-1809924 bp Ori: KEP78341.1 Feature: domain Description: INT_Rci_Hp1_C Location: 1808839-1809046 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 808839-1 809046 bp Feature: domain Description: INT_P4_C Location: 1809265-1809802 bp Feature: domain Description: INT_P4_C Location: 1 809265-1 809802 bp Feature: gene Location: 1809921-1811183 bp Ori: KEP78342.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1810203-1810698 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 81 0203-1 81 0698 bp Feature: gene Location: 1811180-1813198 bp Ori: KEP78343.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1811750-1812200 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 81 1 750-1 81 2200 bp Feature: gene Location: 1813637-1814503 bp Ori: KEP78344.1 Feature: domain Description: Tra5 Location: 1813748-1814498 bp Feature: domain Description: Tra5 Location: 1 81 3748-1 81 4498 bp Feature: gene Location: 1814500-1814799 bp Ori: KEP78345.1 Feature: domain Description: InsE Location: 1814527-1814794 bp Feature: domain Description: InsE Location: 1 81 4527-1 81 4794 bp Feature: gene Location: 2659916-2661949 bp Ori: KEP79105.1 Feature: domain Description: Phage_fiber_2 Location: 2659937-2660057 bp Feature: domain Description: Phage_fiber_2 Location: 2659937-2660057 bp Feature: domain Description: Collar Location: 2661272-2661410 bp Feature: domain Description: Collar Location: 2661 272-2661 41 0 bp Feature: domain Description: Phage_fiber Location: 2661461-2661500 bp Feature: domain Description: Phage_fiber Location: 2661 461 -2661 500 bp Feature: domain Description: Phage_fiber Location: 2661557-2661596 bp Feature: domain Description: Phage_fiber Location: 2661 557-2661 596 bp Feature: domain Description: Phage_fiber Location: 2661752-2661791 bp Feature: domain Description: Phage_fiber Location: 2661 752-2661 791 bp Feature: domain Description: Phage_fiber Location: 2661797-2661830 bp Feature: domain Description: Phage_fiber Location: 2661 797-2661 830 bp Feature: gene Location: 2661949-2662533 bp Ori: KEP79106.1 Feature: domain Description: Caudo_TAP Location: 2662165-2662522 bp Feature: domain Description: Caudo_TAP Location: 26621 65-2662522 bp Feature: gene Location: 2662646-2664016 bp Ori: KEP79107.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2662874-2663480 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2662874-2663480 bp Feature: gene Location: 2663994-2664545 bp Ori: KEP79108.1 Feature: domain Description: SLATT_5 Location: 2664003-2664516 bp Feature: domain Description: SLATT_5 Location: 2664003-266451 6 bp Feature: gene Location: 2664790-2664891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-AbiP2, Phage_GPA (pfam05840), mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8, Tra5 (COG2801)
InsE (COG2963), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)