myRT

myRT report for GCA_000622895.1_Herminiimonas_sp._CN_genome

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Seq: AVCC01000019.1 Herminiimonas sp. CN cn_00019, whole genome shotgun sequence (46827 bp)
Overview 1 RT 1: 4510-8173 bp Neighborhood of RT #1 [4510, 8178] pcaJ_scoB_fam RVT-GII GIIM YfdV Feature: gene Location: 4510-5160 bp Feature: domain Description: pcaJ_scoB_fam Location: 4519-5146 bp Feature: domain Description: pcaJ_scoB_fam Location: 451 9-51 46 bp Feature: gene Location: 5356-5553 bp Feature: gene Location: 5624-6559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5957-6476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5957-6476 bp Feature: gene Location: 6513-6995 bp Feature: domain Description: GIIM Note: maturase Location: 6630-6837 bp Feature: domain Description: GIIM Note: maturase Location: 6630-6837 bp Feature: gene Location: 7288-8178 bp Feature: domain Description: YfdV Location: 7297-8173 bp Feature: domain Description: YfdV Location: 7297-81 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcaJ_scoB_fam (TIGR02428), RVT-GII, GIIM (pfam08388), YfdV (COG0679)

Seq: AVCC01000114.1 Herminiimonas sp. CN cn_00120, whole genome shotgun sequence (8266 bp)
Overview 1 RT 1: 3912-8046 bp Neighborhood of RT #1 [3912, 8129] Arm-DNA-bind_3 INT_P4_C ASCH_yqfb_like ASCH_yqfb_like RVT-DGRs Avd_like Feature: gene Location: 3912-5195 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3984-4170 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3984-4170 bp Feature: domain Description: INT_P4_C Location: 4599-5178 bp Feature: domain Description: INT_P4_C Location: 4599-5178 bp Feature: gene Location: 5519-6154 bp Feature: domain Description: ASCH_yqfb_like Location: 5537-5648 bp Feature: domain Description: ASCH_yqfb_like Location: 5537-5648 bp Feature: domain Description: ASCH_yqfb_like Location: 5894-5975 bp Feature: domain Description: ASCH_yqfb_like Location: 5894-5975 bp Feature: gene Location: 6364-7512 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6598-7363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6598-7363 bp Feature: gene Location: 7713-8129 bp Feature: domain Description: Avd_like Location: 7740-8046 bp Feature: domain Description: Avd_like Location: 7740-8046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), ASCH_yqfb_like (cd06552), RVT-DGRs, Avd_like (cd16376)