myRT

myRT report for GCA_000627475.1_ASM62747v1

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Seq: JJLS01000226.1 (7278 bp)
Overview 1 RT 1: 1-6784 bp Neighborhood of RT #1 [1, 6798] PHA02517 InsE RVT-GII PRK11114 bcsA Feature: gene Location: 1-756 bp Feature: domain Description: PHA02517 Location: 61-757 bp Feature: domain Description: PHA0251 7 Location: 61 -757 bp Feature: gene Location: 756-1082 bp Feature: domain Description: InsE Location: 759-1080 bp Feature: domain Description: InsE Location: 759-1 080 bp Feature: gene Location: 1088-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376-1 688 bp Feature: gene Location: 2479-4629 bp Feature: domain Description: PRK11114 Location: 2539-4612 bp Feature: domain Description: PRK1 1 1 1 4 Location: 2539-461 2 bp Feature: gene Location: 4693-6798 bp Feature: domain Description: bcsA Location: 4735-6784 bp Feature: domain Description: bcsA Location: 4735-6784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), bcsA (PRK11498)

Seq: JJLS01000194.1 (79730 bp)
Overview 1 RT 1: 58889-66892 bp Neighborhood of RT #1 [58889, 67149] DUF4917 AAA_21 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 58889-59908 bp Feature: domain Description: DUF4917 Location: 58949-59873 bp Feature: domain Description: DUF4917 Location: 58949-59873 bp Feature: gene Location: 61794-63554 bp Feature: domain Description: AAA_21 Location: 62100-62322 bp Feature: domain Description: AAA_2 1 Location: 62 100-62 32 2 bp Feature: gene Location: 63669-64769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63852-64380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63852 -64380 bp Feature: gene Location: 65425-66294 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 65947-66118 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 65947-66118 bp Feature: gene Location: 66715-67149 bp Feature: domain Description: HTH_23 Location: 66751-66892 bp Feature: domain Description: HTH_2 3 Location: 66751-66892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_21 (pfam13304), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: JJLS01000057.1 (1102 bp)
Overview 1 RT 1: 1-1002 bp Neighborhood of RT #1 [1, 1070] RVT_N RVT-GII DDE_Tnp_1 Feature: gene Location: 1-548 bp Feature: RT Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 7-547 bp Feature: gene Location: 810-1070 bp Feature: domain Description: DDE_Tnp_1 Location: 816-1002 bp Feature: domain Description: DDE_Tnp_1 Location: 816-1002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JJLS01000064.1 (3344 bp)
Overview 1 RT 1: 8-3340 bp Neighborhood of RT #1 [8, 3344] PHA02517 RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 8-655 bp Feature: domain Description: PHA02517 Location: 11-653 bp Feature: domain Description: PHA02517 Location: 11-653 bp Feature: gene Location: 753-1448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1008 bp Feature: domain Description: GIIM Note: maturase Location: 1056-1287 bp Feature: domain Description: GIIM Note: maturase Location: 1056-1287 bp Feature: gene Location: 1878-2141 bp Feature: domain Description: RAYT Location: 1881-2043 bp Feature: domain Description: RAYT Location: 1881-204 3 bp Feature: gene Location: 2488-3344 bp Feature: domain Description: PRK11447 Location: 2491-3340 bp Feature: domain Description: PRK114 4 7 Location: 24 91-334 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JJLS01000299.1 (36663 bp)
Overview 1 RT 1: 10000-15694 bp Neighborhood of RT #1 [10000, 15702] groES groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 10000-10293 bp Feature: domain Description: groES Location: 10003-10288 bp Feature: domain Description: groES Location: 10003-10288 bp Feature: gene Location: 10337-11983 bp Feature: domain Description: groEL Location: 10343-11966 bp Feature: domain Description: groEL Location: 10343-11966 bp Feature: gene Location: 13095-14753 bp Feature: RT Description: RVT_N Location: 13146-13389 bp Feature: RT Description: RVT_N Location: 13146-13389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13434-14079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13434-14079 bp Feature: domain Description: GIIM Note: maturase Location: 14133-14364 bp Feature: domain Description: GIIM Note: maturase Location: 14133-14364 bp Feature: domain Description: HNHc Note: nucleases Location: 14577-14736 bp Feature: domain Description: HNHc Note: nucleases Location: 145 77-14736 bp Feature: gene Location: 14857-15081 bp Feature: domain Description: DUF2188 Location: 14875-15052 bp Feature: domain Description: DUF2188 Location: 14875 -15 05 2 bp Feature: gene Location: 15349-15702 bp Feature: domain Description: DUF4156 Location: 15418-15694 bp Feature: domain Description: DUF415 6 Location: 15 418-15 694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), DUF4156 (pfam13698)

Seq: JJLS01000010.1 (5277 bp)
Overview 1 RT 1: 1-4106 bp Neighborhood of RT #1 [1, 4156] InsG RVT_N RVT-GII RVT-GII GIIM HNHc MFS_TetA Feature: gene Location: 1-274 bp Feature: domain Description: InsG Location: 4-268 bp Feature: domain Description: InsG Location: 4-26 8 bp Feature: gene Location: 420-1055 bp Feature: RT Description: RVT_N Location: 468-705 bp Feature: RT Description: RVT_N Location: 46 8-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756 -1050 bp Feature: gene Location: 1083-2087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1398 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1449-16 83 bp Feature: domain Description: HNHc Note: nucleases Location: 1893-2052 bp Feature: domain Description: HNHc Note: nucleases Location: 1893-2052 bp Feature: gene Location: 2128-2256 bp Feature: gene Location: 2951-4156 bp Feature: domain Description: MFS_TetA Location: 2969-4106 bp Feature: domain Description: MFS_TetA Location: 296 9-4106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsG (COG3385), RVT_N (pfam13655), MFS_TetA (cd17388)