myRT

myRT report for GCA_000627965.1_ASM62796v1

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Seq: JJLV01000052.1 (1056 bp)
Overview 1 RT 1: 1-1055 bp Neighborhood of RT #1 [1, 1056] InsG RVT-GII Feature: gene Location: 1-363 bp Feature: domain Description: InsG Location: 4-361 bp Feature: domain Description: InsG Location: 4-361 bp Feature: gene Location: 902-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905-1 055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII

Seq: JJLV01000200.1 (79575 bp)
Overview 1 RT 1: 58757-66802 bp Neighborhood of RT #1 [58757, 67059] DUF4917 AAA_21 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 58757-59776 bp Feature: domain Description: DUF4917 Location: 58817-59741 bp Feature: domain Description: DUF4917 Location: 58817-59741 bp Feature: gene Location: 61662-63422 bp Feature: domain Description: AAA_21 Location: 61968-62190 bp Feature: domain Description: AAA_2 1 Location: 61968-62 190 bp Feature: gene Location: 63537-64637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63720-64248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6372 0-642 48 bp Feature: gene Location: 65293-66162 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 65815-65986 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 65815-65986 bp Feature: gene Location: 66583-67059 bp Feature: domain Description: HTH_23 Location: 66661-66802 bp Feature: domain Description: HTH_2 3 Location: 66661-66802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_21 (pfam13304), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: JJLV01000207.1 (6993 bp)
Overview 1 RT 1: 1-6577 bp Neighborhood of RT #1 [1, 6591] PHA02517 InsE RVT-GII PRK11114 bcsA Feature: gene Location: 1-549 bp Feature: domain Description: PHA02517 Location: 61-550 bp Feature: domain Description: PHA02517 Location: 61-550 bp Feature: gene Location: 549-875 bp Feature: domain Description: InsE Location: 552-873 bp Feature: domain Description: InsE Location: 552-873 bp Feature: gene Location: 881-1528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-1481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-1481 bp Feature: gene Location: 2272-4422 bp Feature: domain Description: PRK11114 Location: 2332-4405 bp Feature: domain Description: PRK11114 Location: 23 3 2-4405 bp Feature: gene Location: 4486-6591 bp Feature: domain Description: bcsA Location: 4528-6577 bp Feature: domain Description: bcsA Location: 4528-6577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), bcsA (PRK11498), InsE (COG2963), RVT-GII

Seq: JJLV01000038.1 (24629 bp)
Overview 1 RT 1: 21-3946 bp Neighborhood of RT #1 [21, 3996] RVT_N RVT-GII RVT-GII GIIM HNHc MFS_TetA Feature: gene Location: 21-161 bp Feature: gene Location: 260-895 bp Feature: RT Description: RVT_N Location: 308-545 bp Feature: RT Description: RVT_N Location: 308-54 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-890 bp Feature: gene Location: 923-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1238 bp Feature: domain Description: GIIM Note: maturase Location: 1289-1523 bp Feature: domain Description: GIIM Note: maturase Location: 1289-1523 bp Feature: domain Description: HNHc Note: nucleases Location: 1733-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1733-1892 bp Feature: gene Location: 1968-2096 bp Feature: gene Location: 2791-3996 bp Feature: domain Description: MFS_TetA Location: 2809-3946 bp Feature: domain Description: MFS_TetA Location: 2809-394 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MFS_TetA (cd17388)

Seq: JJLV01000016.1 (4241 bp)
Overview 1 RT 1: 1-4241 bp Neighborhood of RT #1 [1, 4241] PRK11447 RAYT RVT-GII GIIM Feature: gene Location: 1-1541 bp Feature: domain Description: PRK11447 Location: 4-1540 bp Feature: domain Description: PRK11447 Location: 4-15 40 bp Feature: gene Location: 1888-2244 bp Feature: domain Description: RAYT Location: 1891-2146 bp Feature: domain Description: RAYT Location: 1891-2146 bp Feature: gene Location: 2581-3276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-2836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 84-2836 bp Feature: domain Description: GIIM Note: maturase Location: 2884-3115 bp Feature: domain Description: GIIM Note: maturase Location: 2884-3115 bp Feature: gene Location: 3374-4241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: JJLV01000298.1 (34777 bp)
Overview 1 RT 1: 8401-14095 bp Neighborhood of RT #1 [8401, 14103] groES groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 8401-8694 bp Feature: domain Description: groES Location: 8404-8689 bp Feature: domain Description: groES Location: 8404-86 89 bp Feature: gene Location: 8738-10384 bp Feature: domain Description: groEL Location: 8744-10367 bp Feature: domain Description: groEL Location: 8744-1036 7 bp Feature: gene Location: 11496-13154 bp Feature: RT Description: RVT_N Location: 11547-11790 bp Feature: RT Description: RVT_N Location: 11547-11790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11835-12480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11835-12480 bp Feature: domain Description: GIIM Note: maturase Location: 12534-12765 bp Feature: domain Description: GIIM Note: maturase Location: 12534-1276 5 bp Feature: domain Description: HNHc Note: nucleases Location: 12978-13137 bp Feature: domain Description: HNHc Note: nucleases Location: 12978-13137 bp Feature: gene Location: 13258-13482 bp Feature: domain Description: DUF2188 Location: 13276-13453 bp Feature: domain Description: DUF2188 Location: 13276 -13453 bp Feature: gene Location: 13750-14103 bp Feature: domain Description: DUF4156 Location: 13819-14095 bp Feature: domain Description: DUF4156 Location: 13819-14095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), DUF4156 (pfam13698), groES (PRK14533), groEL (PRK12852)