myRT

myRT report for GCA_000627985.1_ASM62798v1

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Seq: JJMC01000065.1 (64816 bp)
Overview 1 RT 1: 38516-42398 bp Neighborhood of RT #1 [38516, 42403] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 38516-38974 bp Feature: domain Description: dut Location: 38522-38969 bp Feature: domain Description: dut Location: 38522-38969 bp Feature: gene Location: 39081-39677 bp Feature: domain Description: slmA Location: 39087-39663 bp Feature: domain Description: slmA Location: 39087-39663 bp Feature: gene Location: 39723-40682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39858-40407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39858-40407 bp Feature: gene Location: 40980-41621 bp Feature: domain Description: pyrE Location: 40983-41616 bp Feature: domain Description: pyrE Location: 40983-41 61 6 bp Feature: gene Location: 41687-42403 bp Feature: domain Description: rph Location: 41690-42398 bp Feature: domain Description: rph Location: 41 690-42398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JJMC01000039.1 (12162 bp)
Overview 1 RT 1: 9091-11262 bp Neighborhood of RT #1 [9091, 11507] RVT-GII GIIM Feature: gene Location: 9091-9234 bp Feature: gene Location: 9670-9804 bp Feature: gene Location: 9999-11507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10257-10989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 57-10989 bp Feature: domain Description: GIIM Note: maturase Location: 11064-11262 bp Feature: domain Description: GIIM Note: maturase Location: 11064-112 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JJMC01000095.1 (3525 bp)
Overview 1 RT 1: 586-3196 bp Neighborhood of RT #1 [586, 3441] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 586-888 bp Feature: domain Description: InsE Location: 589-874 bp Feature: domain Description: InsE Location: 589-874 bp Feature: gene Location: 1087-1326 bp Feature: domain Description: PHA02517 Location: 1090-1261 bp Feature: domain Description: PHA02517 Location: 1090-1261 bp Feature: gene Location: 1933-3441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-2923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-2923 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3196 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3 196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: JJMC01000100.1 (22181 bp)
Overview 1 RT 1: 18327-21281 bp Neighborhood of RT #1 [18327, 21526] PRK15092 PHA02517 RVT-GII GIIM Feature: gene Location: 18327-19202 bp Feature: domain Description: PRK15092 Location: 18330-19188 bp Feature: domain Description: PRK15092 Location: 18330-19188 bp Feature: gene Location: 19454-19840 bp Feature: domain Description: PHA02517 Location: 19457-19838 bp Feature: domain Description: PHA02517 Location: 194 57-19838 bp Feature: gene Location: 20018-21526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20276-21008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20276-21008 bp Feature: domain Description: GIIM Note: maturase Location: 21083-21281 bp Feature: domain Description: GIIM Note: maturase Location: 21083-21281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15092 (DNA-binding transcriptional repressor LrhA; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JJMC01000031.1 (3921 bp)
Overview 1 RT 1: 1101-3021 bp Neighborhood of RT #1 [1101, 3266] PHA02517 RVT-GII GIIM Feature: gene Location: 1101-1229 bp Feature: gene Location: 1195-1581 bp Feature: domain Description: PHA02517 Location: 1198-1579 bp Feature: domain Description: PHA025 17 Location: 1198-15 79 bp Feature: gene Location: 1758-3266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016-2748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016-2748 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3021 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JJMC01000131.1 (5612 bp)
Overview 1 RT 1: 94-4712 bp Neighborhood of RT #1 [94, 4957] PHA02517 PRK09928 RVT-GII GIIM Feature: gene Location: 94-318 bp Feature: domain Description: PHA02517 Location: 97-307 bp Feature: domain Description: PHA02517 Location: 97-307 bp Feature: gene Location: 472-2469 bp Feature: domain Description: PRK09928 Location: 487-2467 bp Feature: domain Description: PRK09928 Location: 487-246 7 bp Feature: gene Location: 3449-4957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3707-4439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3707-4439 bp Feature: domain Description: GIIM Note: maturase Location: 4514-4712 bp Feature: domain Description: GIIM Note: maturase Location: 4514-4712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09928 (choline transport protein BetT; Provisional), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JJMC01000128.1 (3039 bp)
Overview 1 RT 1: 1-2710 bp Neighborhood of RT #1 [1, 2955] COG4584 PHA02517 RVT-GII GIIM Feature: gene Location: 1-193 bp Feature: domain Description: COG4584 Location: 4-193 bp Feature: domain Description: COG4584 Location: 4-193 bp Feature: gene Location: 361-840 bp Feature: domain Description: PHA02517 Location: 421-775 bp Feature: domain Description: PHA02517 Location: 421-7 7 5 bp Feature: gene Location: 1447-2955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 05-2437 bp Feature: domain Description: GIIM Note: maturase Location: 2512-2710 bp Feature: domain Description: GIIM Note: maturase Location: 2512-27 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)