myRT

myRT report for GCA_000629065.1_Pseu_aeru_BWH033_V1

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Seq: KK212087.1 (207833 bp)
Overview 1 RT 1: 106780-117550 bp 2 RT 2: 133809-141976 bp Neighborhood of RT #1 [106780, 117552] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [133809, 141990] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 106780-107151 bp Feature: domain Description: NERD Location: 106879-107050 bp Feature: domain Description: NERD Location: 1 06879-1 07050 bp Feature: gene Location: 107244-108365 bp Feature: domain Description: COG3177 Location: 107262-108354 bp Feature: domain Description: COG31 77 Location: 1 07262-1 08354 bp Feature: gene Location: 109089-110774 bp Feature: RT Description: RVT_N Location: 109146-109386 bp Feature: RT Description: RVT_N Location: 1 091 46-1 09386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109434-110070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09434-1 1 0070 bp Feature: domain Description: GIIM Note: maturase Location: 110124-110355 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 01 24-1 1 0355 bp Feature: domain Description: HNH Note: nucleases Location: 110607-110745 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 0607-1 1 0745 bp Feature: gene Location: 111855-115592 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 111963-112620 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 1 1 963-1 1 2620 bp Feature: domain Description: PRK09776 Location: 112833-113304 bp Feature: domain Description: PRK09776 Location: 1 1 2833-1 1 3304 bp Feature: domain Description: PAS Location: 113376-113886 bp Feature: domain Description: PAS Location: 1 1 3376-1 1 3886 bp Feature: domain Description: PRK10060 Location: 113895-115542 bp Feature: domain Description: PRK1 0060 Location: 1 1 3895-1 1 5542 bp Feature: gene Location: 115699-117552 bp Feature: domain Description: PRK05658 Location: 115711-117550 bp Feature: domain Description: PRK05658 Location: 1 1 571 1 -1 1 7550 bp Feature: gene Location: 133809-135101 bp Feature: domain Description: PRK10770 Location: 133899-135093 bp Feature: domain Description: PRK1 0770 Location: 1 33899-1 35093 bp Feature: gene Location: 135082-137856 bp Feature: domain Description: LptD Location: 135277-137842 bp Feature: domain Description: LptD Location: 1 35277-1 37842 bp Feature: gene Location: 137989-139299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137992-138568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37992-1 38568 bp Feature: domain Description: YkfC Location: 138778-138931 bp Feature: domain Description: YkfC Location: 1 38778-1 38931 bp Feature: domain Description: HNH Note: nucleases Location: 139105-139243 bp Feature: domain Description: HNH Note: nucleases Location: 1 391 05-1 39243 bp Feature: gene Location: 140543-140677 bp Feature: gene Location: 140974-141990 bp Feature: domain Description: COG3178 Location: 140977-141976 bp Feature: domain Description: COG31 78 Location: 1 40977-1 41 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )