myRT

myRT report for GCA_000629165.1_Pseu_aeru_3581_V1

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Seq: KK212432.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.34, whole genome shotgun sequence (51857 bp)
Overview 1 RT 1: 26887-31893 bp Neighborhood of RT #1 [26887, 32783] HipB RVT-UG17 HATPase_c_3 Feature: gene Location: 26887-27168 bp Ori: EZN84677.1 Feature: domain Description: HipB Location: 26908-27142 bp Feature: domain Description: HipB Location: 26908-271 42 bp Feature: gene Location: 27254-27679 bp Feature: gene Location: 28208-29572 bp Ori: EZN84679.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28436-29039 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 28436-29039 bp Feature: gene Location: 30472-31437 bp Feature: gene Location: 31437-32783 bp Ori: EZN84681.1 Feature: domain Description: HATPase_c_3 Location: 31530-31893 bp Feature: domain Description: HATPase_c_3 Location: 31 530-31 893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17, HATPase_c_3 (pfam13589)

Seq: KK212414.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.16, whole genome shotgun sequence (129364 bp)
Overview 1 RT 1: 159-5429 bp Neighborhood of RT #1 [159, 5626] RVT-GII GIIM CHD CHD Feature: gene Location: 159-326 bp Feature: gene Location: 819-2087 bp Ori: EZN87912.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032 -1689 bp Feature: domain Description: GIIM Note: maturase Location: 1767-1989 bp Feature: domain Description: GIIM Note: maturase Location: 1767-1989 bp Feature: gene Location: 2819-2998 bp Feature: gene Location: 4082-5626 bp Ori: EZN87914.1 Feature: domain Description: CHD Location: 4298-4712 bp Feature: domain Description: CHD Location: 42 98-4712 bp Feature: domain Description: CHD Location: 4940-5429 bp Feature: domain Description: CHD Location: 4940-542 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: KK212413.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.15, whole genome shotgun sequence (142297 bp)
Overview 1 RT 1: 99826-107904 bp Neighborhood of RT #1 [99826, 107904] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P Feature: gene Location: 99826-101916 bp Ori: EZN88311.1 Feature: domain Description: HyuA Location: 99841-101896 bp Feature: domain Description: HyuA Location: 99841-101896 bp Feature: gene Location: 101952-103697 bp Ori: EZN88312.1 Feature: domain Description: Hydantoinase_B Location: 101967-103551 bp Feature: domain Description: Hydantoinase_B Location: 101967-103 551 bp Feature: gene Location: 103998-105275 bp Ori: EZN88313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104259-104874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104259-104874 bp Feature: domain Description: GIIM Note: maturase Location: 104928-105156 bp Feature: domain Description: GIIM Note: maturase Location: 104928-105156 bp Feature: gene Location: 105871-107049 bp Ori: EZN88314.1 Feature: domain Description: Porin_O_P Location: 106096-106933 bp Feature: domain Description: Porin_O_P Location: 106096-10693 3 bp Feature: gene Location: 107197-107904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396)

Seq: KK212404.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.6, whole genome shotgun sequence (382677 bp)
Overview 1 RT 1: 297311-308123 bp 2 RT 2: 324381-332562 bp Neighborhood of RT #1 [297311, 308125] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [324381, 332576] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 297311-297646 bp Ori: EZN92956.1 Feature: domain Description: NERD Location: 297410-297581 bp Feature: domain Description: NERD Location: 2974 10-297581 bp Feature: gene Location: 297817-298938 bp Ori: EZN92957.1 Feature: domain Description: COG3177 Location: 297835-298927 bp Feature: domain Description: COG3177 Location: 297835-298927 bp Feature: gene Location: 299662-301347 bp Ori: EZN92958.1 Feature: domain Description: RVT_N Location: 299719-299959 bp Feature: domain Description: RVT_N Location: 299719-299959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300007-300643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300007-30064 3 bp Feature: domain Description: GIIM Note: maturase Location: 300697-300928 bp Feature: domain Description: GIIM Note: maturase Location: 300697-300928 bp Feature: domain Description: HNH Note: nucleases Location: 301180-301318 bp Feature: domain Description: HNH Note: nucleases Location: 301180-301318 bp Feature: gene Location: 302428-306165 bp Ori: EZN92959.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 302536-303193 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 302536-303193 bp Feature: domain Description: PRK09776 Location: 303406-303877 bp Feature: domain Description: PRK09776 Location: 3034 06-303877 bp Feature: domain Description: PAS Location: 303967-304459 bp Feature: domain Description: PAS Location: 303967-304 4 59 bp Feature: domain Description: PRK10060 Location: 304468-306115 bp Feature: domain Description: PRK10060 Location: 304 4 68-306115 bp Feature: gene Location: 306272-308125 bp Ori: EZN92960.1 Feature: domain Description: PRK05658 Location: 306284-308123 bp Feature: domain Description: PRK05658 Location: 306284 -308123 bp Feature: gene Location: 324381-325673 bp Ori: EZN92978.1 Feature: domain Description: PRK10770 Location: 324471-325665 bp Feature: domain Description: PRK10770 Location: 324 4 71-325665 bp Feature: gene Location: 325654-328443 bp Ori: EZN92979.1 Feature: domain Description: LptD Location: 325849-328429 bp Feature: domain Description: LptD Location: 32584 9-3284 29 bp Feature: gene Location: 328576-329886 bp Ori: EZN92980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328579-329155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328579-329155 bp Feature: domain Description: YkfC Location: 329365-329515 bp Feature: domain Description: YkfC Location: 329365-329515 bp Feature: domain Description: HNH Note: nucleases Location: 329692-329830 bp Feature: domain Description: HNH Note: nucleases Location: 329692-329830 bp Feature: gene Location: 331129-331263 bp Feature: gene Location: 331560-332576 bp Ori: EZN92982.1 Feature: domain Description: COG3178 Location: 331563-332562 bp Feature: domain Description: COG3178 Location: 331563-332562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )