myRT

myRT report for GCA_000629185.1_Pseu_aeru_3580_V1

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Seq: KK212491.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.16, whole genome shotgun sequence (177503 bp)
Overview 1 RT 1: 135032-143110 bp Neighborhood of RT #1 [135032, 143110] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P Feature: gene Location: 135032-137122 bp Ori: EZN87297.1 Feature: domain Description: HyuA Location: 135047-137102 bp Feature: domain Description: HyuA Location: 1 35047-1 371 02 bp Feature: gene Location: 137158-138903 bp Ori: EZN87298.1 Feature: domain Description: Hydantoinase_B Location: 137173-138757 bp Feature: domain Description: Hydantoinase_B Location: 1 371 73-1 38757 bp Feature: gene Location: 139204-140481 bp Ori: EZN87299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139465-140080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39465-1 40080 bp Feature: domain Description: GIIM Note: maturase Location: 140134-140362 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 34-1 40362 bp Feature: gene Location: 141077-142255 bp Ori: EZN87300.1 Feature: domain Description: Porin_O_P Location: 141302-142139 bp Feature: domain Description: Porin_O_P Location: 1 41 302-1 421 39 bp Feature: gene Location: 142403-143110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396)

Seq: KK212504.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.29, whole genome shotgun sequence (65000 bp)
Overview 1 RT 1: 26870-31876 bp Neighborhood of RT #1 [26870, 32766] HipB RVT-UG17 HATPase_c_3 Feature: gene Location: 26870-27151 bp Ori: EZN85007.1 Feature: domain Description: HipB Location: 26891-27125 bp Feature: domain Description: HipB Location: 2 6891-2 712 5 bp Feature: gene Location: 27237-27662 bp Feature: gene Location: 28191-29555 bp Ori: EZN85009.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28419-29022 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 8419-2 902 2 bp Feature: gene Location: 30455-31420 bp Feature: gene Location: 31420-32766 bp Ori: EZN85011.1 Feature: domain Description: HATPase_c_3 Location: 31513-31876 bp Feature: domain Description: HATPase_c_3 Location: 31513-31876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17, HATPase_c_3 (pfam13589)

Seq: KK212487.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.12, whole genome shotgun sequence (208731 bp)
Overview 1 RT 1: 77890-84700 bp Neighborhood of RT #1 [77890, 84897] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 77890-78717 bp Ori: EZN88447.1 Feature: domain Description: ABC_phnC Location: 77920-78634 bp Feature: domain Description: ABC_phnC Location: 77920-7863 4 bp Feature: gene Location: 79060-79701 bp Ori: EZN88448.1 Feature: domain Description: DUF772 Location: 79210-79405 bp Feature: domain Description: DUF772 Location: 79210-79405 bp Feature: gene Location: 80090-81358 bp Ori: EZN88449.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80303-80960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803 03 -80960 bp Feature: domain Description: GIIM Note: maturase Location: 81038-81260 bp Feature: domain Description: GIIM Note: maturase Location: 8103 8-81260 bp Feature: gene Location: 82090-82269 bp Feature: gene Location: 83353-84897 bp Ori: EZN88451.1 Feature: domain Description: CHD Location: 83569-83983 bp Feature: domain Description: CHD Location: 83 569-83 983 bp Feature: domain Description: CHD Location: 84211-84700 bp Feature: domain Description: CHD Location: 84211-84700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: KK212479.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.4, whole genome shotgun sequence (384712 bp)
Overview 1 RT 1: 299426-310238 bp 2 RT 2: 326496-334677 bp Neighborhood of RT #1 [299426, 310240] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [326496, 334691] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 299426-299761 bp Ori: EZN92585.1 Feature: domain Description: NERD Location: 299525-299696 bp Feature: domain Description: NERD Location: 299525-299696 bp Feature: gene Location: 299932-301053 bp Ori: EZN92586.1 Feature: domain Description: COG3177 Location: 299950-301042 bp Feature: domain Description: COG3177 Location: 299950-30104 2 bp Feature: gene Location: 301777-303462 bp Ori: EZN92587.1 Feature: domain Description: RVT_N Location: 301834-302074 bp Feature: domain Description: RVT_N Location: 301834 -302074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302122-302758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302122-302758 bp Feature: domain Description: GIIM Note: maturase Location: 302812-303043 bp Feature: domain Description: GIIM Note: maturase Location: 302812-30304 3 bp Feature: domain Description: HNH Note: nucleases Location: 303295-303433 bp Feature: domain Description: HNH Note: nucleases Location: 303295-3034 33 bp Feature: gene Location: 304543-308280 bp Ori: EZN92588.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 304651-305308 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 304 651-305308 bp Feature: domain Description: PRK09776 Location: 305521-305992 bp Feature: domain Description: PRK09776 Location: 305521-305992 bp Feature: domain Description: PAS Location: 306082-306574 bp Feature: domain Description: PAS Location: 306082-306574 bp Feature: domain Description: PRK10060 Location: 306583-308230 bp Feature: domain Description: PRK10060 Location: 306583-308230 bp Feature: gene Location: 308387-310240 bp Ori: EZN92589.1 Feature: domain Description: PRK05658 Location: 308399-310238 bp Feature: domain Description: PRK05658 Location: 308399-310238 bp Feature: gene Location: 326496-327788 bp Ori: EZN92607.1 Feature: domain Description: PRK10770 Location: 326586-327780 bp Feature: domain Description: PRK10770 Location: 326586-327780 bp Feature: gene Location: 327769-330558 bp Ori: EZN92608.1 Feature: domain Description: LptD Location: 327964-330544 bp Feature: domain Description: LptD Location: 327964 -33054 4 bp Feature: gene Location: 330691-332001 bp Ori: EZN92609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330694-331270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330694 -331270 bp Feature: domain Description: YkfC Location: 331480-331630 bp Feature: domain Description: YkfC Location: 3314 80-331630 bp Feature: domain Description: HNH Note: nucleases Location: 331807-331945 bp Feature: domain Description: HNH Note: nucleases Location: 331807-33194 5 bp Feature: gene Location: 333244-333378 bp Feature: gene Location: 333675-334691 bp Ori: EZN92611.1 Feature: domain Description: COG3178 Location: 333678-334677 bp Feature: domain Description: COG3178 Location: 333678-334 677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )