myRT

myRT report for GCA_000629405.1_Pseu_aeru_BWH059_V1

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Seq: KK213173.1 Pseudomonas aeruginosa BWH059 genomic scaffold adTvw-supercont1.1, whole genome shotgun sequence (4217286 bp)
Overview 1 RT 1: 52856-57862 bp 2 RT 2: 421104-427914 bp Neighborhood of RT #1 [52856, 58752] HipB RVT-UG17 HATPase_c_3 Neighborhood of RT #2 [421104, 428111] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 52856-53137 bp Ori: EZO72570.1 Feature: domain Description: HipB Location: 52877-53111 bp Feature: domain Description: HipB Location: 52877-531 1 1 bp Feature: gene Location: 53223-53648 bp Feature: gene Location: 54177-55541 bp Ori: EZO72572.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 54405-55008 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 54405-55008 bp Feature: gene Location: 56441-57406 bp Feature: gene Location: 57406-58752 bp Ori: EZO72574.1 Feature: domain Description: HATPase_c_3 Location: 57499-57862 bp Feature: domain Description: HATPase_c_3 Location: 57499-57862 bp Feature: gene Location: 421104-421931 bp Ori: EZO70618.1 Feature: domain Description: ABC_phnC Location: 421134-421848 bp Feature: domain Description: ABC_phnC Location: 421 1 34-421 848 bp Feature: gene Location: 422274-422915 bp Ori: EZO70619.1 Feature: domain Description: DUF772 Location: 422424-422619 bp Feature: domain Description: DUF772 Location: 422424-42261 9 bp Feature: gene Location: 423304-424572 bp Ori: EZO70620.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423517-424174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42351 7-4241 74 bp Feature: domain Description: GIIM Note: maturase Location: 424252-424474 bp Feature: domain Description: GIIM Note: maturase Location: 424252-424474 bp Feature: gene Location: 425304-425483 bp Feature: gene Location: 426567-428111 bp Ori: EZO70622.1 Feature: domain Description: CHD Location: 426783-427197 bp Feature: domain Description: CHD Location: 426783-4271 97 bp Feature: domain Description: CHD Location: 427425-427914 bp Feature: domain Description: CHD Location: 427425-42791 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17, HATPase_c_3 (pfam13589), ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: KK213175.1 Pseudomonas aeruginosa BWH059 genomic scaffold adTvw-supercont1.3, whole genome shotgun sequence (709341 bp)
Overview 1 RT 1: 618352-629164 bp 2 RT 2: 645422-653603 bp Neighborhood of RT #1 [618352, 629166] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [645422, 653617] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 618352-618687 bp Ori: EZO61794.1 Feature: domain Description: NERD Location: 618451-618622 bp Feature: domain Description: NERD Location: 618451-61862 2 bp Feature: gene Location: 618858-619979 bp Ori: EZO61795.1 Feature: domain Description: COG3177 Location: 618876-619968 bp Feature: domain Description: COG3177 Location: 618876-619968 bp Feature: gene Location: 620703-622388 bp Ori: EZO61796.1 Feature: domain Description: RVT_N Location: 620760-621000 bp Feature: domain Description: RVT_N Location: 62 0760-62 1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621048-621684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 1048-62 1684 bp Feature: domain Description: GIIM Note: maturase Location: 621738-621969 bp Feature: domain Description: GIIM Note: maturase Location: 62 1738-62 1969 bp Feature: domain Description: HNH Note: nucleases Location: 622221-622359 bp Feature: domain Description: HNH Note: nucleases Location: 62 2 2 2 1-62 2 359 bp Feature: gene Location: 623469-627206 bp Ori: EZO61797.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 623577-624234 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 62 3577-62 42 34 bp Feature: domain Description: PRK09776 Location: 624447-624918 bp Feature: domain Description: PRK09776 Location: 62 4447-62 4918 bp Feature: domain Description: PAS Location: 625008-625500 bp Feature: domain Description: PAS Location: 62 5008-62 5500 bp Feature: domain Description: PRK10060 Location: 625509-627156 bp Feature: domain Description: PRK10060 Location: 62 5509-62 7156 bp Feature: gene Location: 627313-629166 bp Ori: EZO61798.1 Feature: domain Description: PRK05658 Location: 627325-629164 bp Feature: domain Description: PRK05658 Location: 62 732 5-62 9164 bp Feature: gene Location: 645422-646714 bp Ori: EZO61816.1 Feature: domain Description: PRK10770 Location: 645512-646706 bp Feature: domain Description: PRK10770 Location: 645512 -646706 bp Feature: gene Location: 646695-649484 bp Ori: EZO61817.1 Feature: domain Description: LptD Location: 646890-649470 bp Feature: domain Description: LptD Location: 646890-649470 bp Feature: gene Location: 649617-650927 bp Ori: EZO61818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649620-650196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64962 0-650196 bp Feature: domain Description: YkfC Location: 650406-650556 bp Feature: domain Description: YkfC Location: 650406-650556 bp Feature: domain Description: HNH Note: nucleases Location: 650733-650871 bp Feature: domain Description: HNH Note: nucleases Location: 650733-650871 bp Feature: gene Location: 652170-652304 bp Feature: gene Location: 652601-653617 bp Ori: EZO61820.1 Feature: domain Description: COG3178 Location: 652604-653603 bp Feature: domain Description: COG3178 Location: 652 604-653603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )