myRT

myRT report for GCA_000629425.1_Pseu_aeru_BWH058_V1

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Seq: KK213183.1 Pseudomonas aeruginosa BWH058 genomic scaffold adTyf-supercont1.1, whole genome shotgun sequence (3661179 bp)
Overview 1 RT 1: 638738-649043 bp 2 RT 2: 665302-673469 bp Neighborhood of RT #1 [638738, 649045] COG3177 RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [665302, 673483] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 638738-639859 bp Feature: domain Description: COG3177 Location: 638756-639848 bp Feature: domain Description: COG31 77 Location: 638756-639848 bp Feature: gene Location: 640118-640279 bp Feature: gene Location: 640582-641532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640585-640828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640585-640828 bp Feature: domain Description: GIIM Note: maturase Location: 640882-641113 bp Feature: domain Description: GIIM Note: maturase Location: 640882-641 1 1 3 bp Feature: domain Description: HNH Note: nucleases Location: 641365-641503 bp Feature: domain Description: HNH Note: nucleases Location: 641 365-641 503 bp Feature: gene Location: 643348-647085 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 643456-644113 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 643456-6441 1 3 bp Feature: domain Description: PRK09776 Location: 644326-644797 bp Feature: domain Description: PRK09776 Location: 644326-644797 bp Feature: domain Description: PAS Location: 644842-645379 bp Feature: domain Description: PAS Location: 644842-645379 bp Feature: domain Description: PRK10060 Location: 645388-647035 bp Feature: domain Description: PRK1 0060 Location: 645388-647035 bp Feature: gene Location: 647192-649045 bp Feature: domain Description: PRK05658 Location: 647204-649043 bp Feature: domain Description: PRK05658 Location: 647204-649043 bp Feature: gene Location: 665302-666594 bp Feature: domain Description: PRK10770 Location: 665392-666586 bp Feature: domain Description: PRK1 0770 Location: 665392-666586 bp Feature: gene Location: 666575-669349 bp Feature: domain Description: LptD Location: 666770-669335 bp Feature: domain Description: LptD Location: 666770-669335 bp Feature: gene Location: 669482-670792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669485-670061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669485-670061 bp Feature: domain Description: YkfC Location: 670268-670421 bp Feature: domain Description: YkfC Location: 670268-670421 bp Feature: domain Description: HNH Note: nucleases Location: 670598-670736 bp Feature: domain Description: HNH Note: nucleases Location: 670598-670736 bp Feature: gene Location: 672036-672170 bp Feature: gene Location: 672467-673483 bp Feature: domain Description: COG3178 Location: 672470-673469 bp Feature: domain Description: COG31 78 Location: 672470-673469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )