myRT

myRT report for GCA_000629445.1_Pseu_aeru_BWH057_V1

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Seq: KK213189.1 Pseudomonas aeruginosa BWH057 genomic scaffold adTyM-supercont1.2, whole genome shotgun sequence (1770046 bp)
Overview 1 RT 1: 994807-1001405 bp Neighborhood of RT #1 [994807, 1001407] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF PHA02517 Feature: gene Location: 994807-996252 bp Ori: EZO72870.1 Feature: domain Description: AdoMet_MTases Location: 994930-995296 bp Feature: domain Description: AdoMet_MTases Location: 994930-995296 bp Feature: gene Location: 996357-997382 bp Ori: EZO72871.1 Feature: domain Description: DEXHc_Snf Location: 996549-996795 bp Feature: domain Description: DEXHc_Snf Location: 996549-996795 bp Feature: gene Location: 997979-999697 bp Ori: EZO72872.1 Feature: domain Description: RVT_N Location: 998036-998273 bp Feature: domain Description: RVT_N Location: 998036-998273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998324-998975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998324-998975 bp Feature: domain Description: GIIM Note: maturase Location: 999029-999260 bp Feature: domain Description: GIIM Note: maturase Location: 999029-999260 bp Feature: domain Description: HNHc Note: nucleases Location: 999494-999650 bp Feature: domain Description: HNHc Note: nucleases Location: 999494-999650 bp Feature: gene Location: 999918-1001024 bp Ori: EZO72873.1 Feature: domain Description: SF2_C_SNF Location: 1000479-1000860 bp Feature: domain Description: SF2_C_SNF Location: 1 000479-1 000860 bp Feature: gene Location: 1001180-1001407 bp Ori: EZO72874.1 Feature: domain Description: PHA02517 Location: 1001183-1001405 bp Feature: domain Description: PHA0251 7 Location: 1 001 1 83-1 001 405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KK213191.1 Pseudomonas aeruginosa BWH057 genomic scaffold adTyM-supercont1.4, whole genome shotgun sequence (720079 bp)
Overview 1 RT 1: 634150-645397 bp 2 RT 2: 661655-669836 bp Neighborhood of RT #1 [634150, 645399] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [661655, 669850] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 634150-634920 bp Ori: EZO66742.1 Feature: domain Description: NERD Location: 634249-634582 bp Feature: domain Description: NERD Location: 6342 49-634582 bp Feature: domain Description: zf-C4_Topoisom Location: 634801-634915 bp Feature: domain Description: zf-C4_Topoisom Location: 634801-634915 bp Feature: gene Location: 635091-636212 bp Ori: EZO66743.1 Feature: domain Description: COG3177 Location: 635109-636201 bp Feature: domain Description: COG3177 Location: 635109-6362 01 bp Feature: gene Location: 636936-638621 bp Ori: EZO66744.1 Feature: domain Description: RVT_N Location: 636993-637233 bp Feature: domain Description: RVT_N Location: 636993-6372 33 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637281-637917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6372 81-637917 bp Feature: domain Description: GIIM Note: maturase Location: 637971-638202 bp Feature: domain Description: GIIM Note: maturase Location: 637971-6382 02 bp Feature: domain Description: HNH Note: nucleases Location: 638454-638592 bp Feature: domain Description: HNH Note: nucleases Location: 638454-638592 bp Feature: gene Location: 639702-643439 bp Ori: EZO66745.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 639810-640467 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 639810-640467 bp Feature: domain Description: PRK09776 Location: 640680-641151 bp Feature: domain Description: PRK09776 Location: 640680-641151 bp Feature: domain Description: PAS Location: 641223-641733 bp Feature: domain Description: PAS Location: 6412 2 3-641733 bp Feature: domain Description: PRK10060 Location: 641742-643389 bp Feature: domain Description: PRK10060 Location: 641742 -643389 bp Feature: gene Location: 643546-645399 bp Ori: EZO66746.1 Feature: domain Description: PRK05658 Location: 643558-645397 bp Feature: domain Description: PRK05658 Location: 643558-645397 bp Feature: gene Location: 661655-662947 bp Ori: EZO66764.1 Feature: domain Description: PRK10770 Location: 661745-662939 bp Feature: domain Description: PRK10770 Location: 661745-662 939 bp Feature: gene Location: 662928-665717 bp Ori: EZO66765.1 Feature: domain Description: LptD Location: 663123-665703 bp Feature: domain Description: LptD Location: 66312 3-665703 bp Feature: gene Location: 665850-667160 bp Ori: EZO66766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665853-666426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665853-66642 6 bp Feature: domain Description: YkfC Location: 666639-666789 bp Feature: domain Description: YkfC Location: 666639-666789 bp Feature: domain Description: HNH Note: nucleases Location: 666966-667104 bp Feature: domain Description: HNH Note: nucleases Location: 666966-667104 bp Feature: gene Location: 668403-668537 bp Feature: gene Location: 668834-669850 bp Ori: EZO66768.1 Feature: domain Description: COG3178 Location: 668837-669836 bp Feature: domain Description: COG3178 Location: 668837-669836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: KK213188.1 Pseudomonas aeruginosa BWH057 genomic scaffold adTyM-supercont1.1, whole genome shotgun sequence (2435259 bp)
Overview 1 RT 1: 2139380-2145317 bp Neighborhood of RT #1 [2139380, 2145317] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 2139380-2140117 bp Ori: EZO77764.1 Feature: domain Description: resist_ArsH Location: 2139419-2140073 bp Feature: domain Description: resist_ArsH Location: 213 9419-2140073 bp Feature: gene Location: 2140176-2141435 bp Ori: EZO77765.1 Feature: domain Description: KOG0389 Location: 2140206-2140326 bp Feature: domain Description: KOG03 89 Location: 2140206-21403 26 bp Feature: domain Description: SF2_C_SNF Location: 2140884-2141271 bp Feature: domain Description: SF2_C_SNF Location: 2140884-2141271 bp Feature: gene Location: 2141503-2143221 bp Ori: EZO77766.1 Feature: domain Description: RVT_N Location: 2141560-2141797 bp Feature: domain Description: RVT_N Location: 2141560-2141797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2141848-2142499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2141848-2142499 bp Feature: domain Description: GIIM Note: maturase Location: 2142553-2142784 bp Feature: domain Description: GIIM Note: maturase Location: 2142553 -2142784 bp Feature: domain Description: HNHc Note: nucleases Location: 2143018-2143174 bp Feature: domain Description: HNHc Note: nucleases Location: 2143 018-2143 174 bp Feature: gene Location: 2143818-2144873 bp Ori: EZO77767.1 Feature: domain Description: DEXHc_Snf Location: 2144037-2144295 bp Feature: domain Description: DEXHc_Snf Location: 214403 7-2144295 bp Feature: gene Location: 2145090-2145317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: KK213190.1 Pseudomonas aeruginosa BWH057 genomic scaffold adTyM-supercont1.3, whole genome shotgun sequence (761662 bp)
Overview 1 RT 1: 119282-126397 bp 2 RT 2: 571940-578628 bp Neighborhood of RT #1 [119282, 126408] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Neighborhood of RT #2 [571940, 578690] DDE_Tnp_1 RVT-UG2 YHI9 STN TonB-siderophor Feature: gene Location: 119282-119923 bp Ori: EZO69625.1 Feature: domain Description: clpP Location: 119336-119912 bp Feature: domain Description: clpP Location: 119336-119912 bp Feature: gene Location: 120017-121327 bp Ori: EZO69626.1 Feature: domain Description: tig Location: 120020-121298 bp Feature: domain Description: tig Location: 120020-121298 bp Feature: gene Location: 121457-123160 bp Ori: EZO69627.1 Feature: domain Description: RVT_N Location: 121514-121757 bp Feature: domain Description: RVT_N Location: 121514 -121757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121802-122438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121802-1224 38 bp Feature: domain Description: GIIM Note: maturase Location: 122489-122723 bp Feature: domain Description: GIIM Note: maturase Location: 1224 89-122723 bp Feature: domain Description: HNH Note: nucleases Location: 122975-123113 bp Feature: domain Description: HNH Note: nucleases Location: 122975-123113 bp Feature: gene Location: 124414-125121 bp Ori: EZO69628.1 Feature: domain Description: OmpR Location: 124438-125104 bp Feature: domain Description: OmpR Location: 124 4 38-125104 bp Feature: gene Location: 125122-126408 bp Ori: EZO69629.1 Feature: domain Description: PRK10604 Location: 125125-126397 bp Feature: domain Description: PRK10604 Location: 125125-126397 bp Feature: gene Location: 571940-573211 bp Ori: EZO69155.1 Feature: domain Description: DDE_Tnp_1 Location: 572267-572930 bp Feature: domain Description: DDE_Tnp_1 Location: 572267-572930 bp Feature: gene Location: 573508-573600 bp Feature: gene Location: 573779-575068 bp Ori: EZO69157.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 573971-574757 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 573971-574 757 bp Feature: gene Location: 575252-576088 bp Ori: EZO69158.1 Feature: domain Description: YHI9 Location: 575264-576080 bp Feature: domain Description: YHI9 Location: 575264 -576080 bp Feature: gene Location: 576249-578690 bp Ori: EZO69159.1 Feature: domain Description: STN Location: 576408-576555 bp Feature: domain Description: STN Location: 5764 08-576555 bp Feature: domain Description: TonB-siderophor Location: 576669-578628 bp Feature: domain Description: TonB-siderophor Location: 576669-578628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional), DDE_Tnp_1 (pfam01609), RVT-UG2
YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783)