myRT

myRT report for GCA_000629465.1_Pseu_aeru_BWH056_V1

Download annotations/find similar RTs

Seq: KK213202.1 Pseudomonas aeruginosa BWH056 genomic scaffold adTwB-supercont1.1, whole genome shotgun sequence (2350826 bp)
Overview 1 RT 1: 2057700-2063637 bp Neighborhood of RT #1 [2057700, 2063637] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 2057700-2058437 bp Ori: EZO84943.1 Feature: domain Description: resist_ArsH Location: 2057739-2058393 bp Feature: domain Description: resist_ArsH Location: 2057739-2058393 bp Feature: gene Location: 2058496-2059755 bp Ori: EZO84944.1 Feature: domain Description: KOG0389 Location: 2058526-2058646 bp Feature: domain Description: KOG0389 Location: 2058526-2058646 bp Feature: domain Description: SF2_C_SNF Location: 2059204-2059591 bp Feature: domain Description: SF2_C_SNF Location: 2059204-2059591 bp Feature: gene Location: 2059823-2061541 bp Ori: EZO84945.1 Feature: domain Description: RVT_N Location: 2059880-2060117 bp Feature: domain Description: RVT_N Location: 2059880-20601 1 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2060168-2060819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20601 68-206081 9 bp Feature: domain Description: GIIM Note: maturase Location: 2060873-2061104 bp Feature: domain Description: GIIM Note: maturase Location: 2060873-2061 1 04 bp Feature: domain Description: HNHc Note: nucleases Location: 2061338-2061494 bp Feature: domain Description: HNHc Note: nucleases Location: 2061 338-2061 494 bp Feature: gene Location: 2062138-2063193 bp Ori: EZO84946.1 Feature: domain Description: DEXHc_Snf Location: 2062357-2062615 bp Feature: domain Description: DEXHc_Snf Location: 2062357-206261 5 bp Feature: gene Location: 2063410-2063637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: KK213203.1 Pseudomonas aeruginosa BWH056 genomic scaffold adTwB-supercont1.2, whole genome shotgun sequence (1439890 bp)
Overview 1 RT 1: 380670-387268 bp Neighborhood of RT #1 [380670, 387270] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF PHA02517 Feature: gene Location: 380670-382115 bp Ori: EZO80969.1 Feature: domain Description: AdoMet_MTases Location: 380793-381159 bp Feature: domain Description: AdoMet_MTases Location: 380793-381159 bp Feature: gene Location: 382220-383245 bp Ori: EZO80970.1 Feature: domain Description: DEXHc_Snf Location: 382412-382658 bp Feature: domain Description: DEXHc_Snf Location: 382 412 -382 658 bp Feature: gene Location: 383842-385560 bp Ori: EZO80971.1 Feature: domain Description: RVT_N Location: 383899-384136 bp Feature: domain Description: RVT_N Location: 383899-384136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384187-384838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384187-384838 bp Feature: domain Description: GIIM Note: maturase Location: 384892-385123 bp Feature: domain Description: GIIM Note: maturase Location: 384892 -38512 3 bp Feature: domain Description: HNHc Note: nucleases Location: 385357-385513 bp Feature: domain Description: HNHc Note: nucleases Location: 385357-385513 bp Feature: gene Location: 385781-386887 bp Ori: EZO80972.1 Feature: domain Description: SF2_C_SNF Location: 386342-386723 bp Feature: domain Description: SF2 _C_SNF Location: 386342 -38672 3 bp Feature: gene Location: 387043-387270 bp Ori: EZO80973.1 Feature: domain Description: PHA02517 Location: 387046-387268 bp Feature: domain Description: PHA02 517 Location: 387046-3872 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KK213204.1 Pseudomonas aeruginosa BWH056 genomic scaffold adTwB-supercont1.3, whole genome shotgun sequence (840546 bp)
Overview 1 RT 1: 680707-691954 bp 2 RT 2: 708212-716393 bp Neighborhood of RT #1 [680707, 691956] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [708212, 716407] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 680707-681477 bp Ori: EZO76462.1 Feature: domain Description: NERD Location: 680806-681139 bp Feature: domain Description: NERD Location: 680806-68113 9 bp Feature: domain Description: zf-C4_Topoisom Location: 681358-681472 bp Feature: domain Description: zf-C4_Topoisom Location: 6813 58-681472 bp Feature: gene Location: 681648-682769 bp Ori: EZO76463.1 Feature: domain Description: COG3177 Location: 681666-682758 bp Feature: domain Description: COG3 177 Location: 681666-682758 bp Feature: gene Location: 683493-685178 bp Ori: EZO76464.1 Feature: domain Description: RVT_N Location: 683550-683790 bp Feature: domain Description: RVT_N Location: 683 550-683 790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683838-684474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 83 8-684474 bp Feature: domain Description: GIIM Note: maturase Location: 684528-684759 bp Feature: domain Description: GIIM Note: maturase Location: 684528-684759 bp Feature: domain Description: HNH Note: nucleases Location: 685011-685149 bp Feature: domain Description: HNH Note: nucleases Location: 685011-685149 bp Feature: gene Location: 686259-689996 bp Ori: EZO76465.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 686367-687024 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6863 67-687024 bp Feature: domain Description: PRK09776 Location: 687237-687708 bp Feature: domain Description: PRK09776 Location: 68723 7-687708 bp Feature: domain Description: PAS Location: 687780-688290 bp Feature: domain Description: PAS Location: 687780-688290 bp Feature: domain Description: PRK10060 Location: 688299-689946 bp Feature: domain Description: PRK10060 Location: 688299-689946 bp Feature: gene Location: 690103-691956 bp Ori: EZO76466.1 Feature: domain Description: PRK05658 Location: 690115-691954 bp Feature: domain Description: PRK05658 Location: 690115-691954 bp Feature: gene Location: 708212-709504 bp Ori: EZO76484.1 Feature: domain Description: PRK10770 Location: 708302-709496 bp Feature: domain Description: PRK10770 Location: 7083 02-709496 bp Feature: gene Location: 709485-712274 bp Ori: EZO76485.1 Feature: domain Description: LptD Location: 709680-712260 bp Feature: domain Description: LptD Location: 709680-712260 bp Feature: gene Location: 712407-713717 bp Ori: EZO76486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712410-712983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712410-712983 bp Feature: domain Description: YkfC Location: 713196-713346 bp Feature: domain Description: YkfC Location: 713 196-713 3 46 bp Feature: domain Description: HNH Note: nucleases Location: 713523-713661 bp Feature: domain Description: HNH Note: nucleases Location: 713 523 -713 661 bp Feature: gene Location: 714960-715094 bp Feature: gene Location: 715391-716407 bp Ori: EZO76488.1 Feature: domain Description: COG3178 Location: 715394-716393 bp Feature: domain Description: COG3 178 Location: 7153 94-7163 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: KK213205.1 Pseudomonas aeruginosa BWH056 genomic scaffold adTwB-supercont1.4, whole genome shotgun sequence (759491 bp)
Overview 1 RT 1: 118544-125659 bp 2 RT 2: 569769-576457 bp Neighborhood of RT #1 [118544, 125670] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Neighborhood of RT #2 [569769, 576519] DDE_Tnp_1 RVT-UG2 YHI9 STN TonB-siderophor Feature: gene Location: 118544-119185 bp Ori: EZO75666.1 Feature: domain Description: clpP Location: 118598-119174 bp Feature: domain Description: clpP Location: 118598-119174 bp Feature: gene Location: 119279-120589 bp Ori: EZO75667.1 Feature: domain Description: tig Location: 119282-120560 bp Feature: domain Description: tig Location: 119282-120560 bp Feature: gene Location: 120719-122422 bp Ori: EZO75668.1 Feature: domain Description: RVT_N Location: 120776-121019 bp Feature: domain Description: RVT_N Location: 120776-121019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121064-121700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121064 -121700 bp Feature: domain Description: GIIM Note: maturase Location: 121751-121985 bp Feature: domain Description: GIIM Note: maturase Location: 121751-121985 bp Feature: domain Description: HNH Note: nucleases Location: 122237-122375 bp Feature: domain Description: HNH Note: nucleases Location: 122237-122375 bp Feature: gene Location: 123676-124383 bp Ori: EZO75669.1 Feature: domain Description: OmpR Location: 123700-124366 bp Feature: domain Description: OmpR Location: 123700-124 366 bp Feature: gene Location: 124384-125670 bp Ori: EZO75670.1 Feature: domain Description: PRK10604 Location: 124387-125659 bp Feature: domain Description: PRK10604 Location: 124 387-125659 bp Feature: gene Location: 569769-571040 bp Ori: EZO74852.1 Feature: domain Description: DDE_Tnp_1 Location: 570096-570759 bp Feature: domain Description: DDE_Tnp_1 Location: 570096-570759 bp Feature: gene Location: 571337-571429 bp Feature: gene Location: 571608-572897 bp Ori: EZO74854.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 571800-572586 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 571800-572586 bp Feature: gene Location: 573081-573917 bp Ori: EZO74855.1 Feature: domain Description: YHI9 Location: 573093-573909 bp Feature: domain Description: YHI9 Location: 573093-573909 bp Feature: gene Location: 574078-576519 bp Ori: EZO74856.1 Feature: domain Description: STN Location: 574237-574384 bp Feature: domain Description: STN Location: 574 237-574 384 bp Feature: domain Description: TonB-siderophor Location: 574498-576457 bp Feature: domain Description: TonB-siderophor Location: 574 4 98-5764 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional), DDE_Tnp_1 (pfam01609), RVT-UG2
YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783)