myRT

myRT report for GCA_000629505.1_Pseu_aeru_BWH054_V1

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Seq: KK213223.1 Pseudomonas aeruginosa BWH054 genomic scaffold adTyv-supercont1.1, whole genome shotgun sequence (2733922 bp)
Overview 1 RT 1: 220706-226419 bp Neighborhood of RT #1 [220706, 226448] Nnt1 YbaY RVT-GII GIIM HNHc TIGR00244 ribD Feature: gene Location: 220706-221368 bp Feature: domain Description: Nnt1 Location: 220712-221177 bp Feature: domain Description: Nnt1 Location: 22071 2-221 1 77 bp Feature: gene Location: 221365-221823 bp Feature: domain Description: YbaY Location: 221374-221818 bp Feature: domain Description: YbaY Location: 221 374-221 81 8 bp Feature: gene Location: 223465-224769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223468-224044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223468-224044 bp Feature: domain Description: GIIM Note: maturase Location: 224095-224329 bp Feature: domain Description: GIIM Note: maturase Location: 224095-224329 bp Feature: domain Description: HNHc Note: nucleases Location: 224548-224713 bp Feature: domain Description: HNHc Note: nucleases Location: 224548-22471 3 bp Feature: gene Location: 224866-225330 bp Feature: domain Description: TIGR00244 Location: 224869-225307 bp Feature: domain Description: TIGR00244 Location: 224869-225307 bp Feature: gene Location: 225327-226448 bp Feature: domain Description: ribD Location: 225342-226419 bp Feature: domain Description: ribD Location: 225342-22641 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nnt1 (COG3897), YbaY (COG3126), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786)

Seq: KK213226.1 Pseudomonas aeruginosa BWH054 genomic scaffold adTyv-supercont1.4, whole genome shotgun sequence (818669 bp)
Overview 1 RT 1: 652058-662366 bp 2 RT 2: 678625-686791 bp Neighborhood of RT #1 [652058, 662368] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [678625, 686805] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 652058-653179 bp Feature: domain Description: COG3177 Location: 652076-653168 bp Feature: domain Description: COG3177 Location: 652 076-653168 bp Feature: gene Location: 653441-653602 bp Feature: gene Location: 653905-655590 bp Feature: RT Description: RVT_N Location: 653962-654202 bp Feature: RT Description: RVT_N Location: 653962 -6542 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654250-654886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6542 50-654886 bp Feature: domain Description: GIIM Note: maturase Location: 654940-655171 bp Feature: domain Description: GIIM Note: maturase Location: 654940-655171 bp Feature: domain Description: HNH Note: nucleases Location: 655423-655561 bp Feature: domain Description: HNH Note: nucleases Location: 65542 3-655561 bp Feature: gene Location: 656671-660408 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 656779-657436 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 656779-657436 bp Feature: domain Description: PRK09776 Location: 657649-658120 bp Feature: domain Description: PRK09776 Location: 657649-65812 0 bp Feature: domain Description: PAS Location: 658180-658702 bp Feature: domain Description: PAS Location: 658180-658702 bp Feature: domain Description: PRK10060 Location: 658711-660358 bp Feature: domain Description: PRK10060 Location: 658711-660358 bp Feature: gene Location: 660515-662368 bp Feature: domain Description: PRK05658 Location: 660527-662366 bp Feature: domain Description: PRK05658 Location: 66052 7-662 366 bp Feature: gene Location: 678625-679917 bp Feature: domain Description: PRK10770 Location: 678715-679909 bp Feature: domain Description: PRK10770 Location: 678715-679909 bp Feature: gene Location: 679898-682672 bp Feature: domain Description: LptD Location: 680093-682658 bp Feature: domain Description: LptD Location: 680093-682 658 bp Feature: gene Location: 682805-684115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682808-683384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682 808-683384 bp Feature: domain Description: YkfC Location: 683594-683744 bp Feature: domain Description: YkfC Location: 683594-683744 bp Feature: domain Description: HNH Note: nucleases Location: 683921-684059 bp Feature: domain Description: HNH Note: nucleases Location: 68392 1-684059 bp Feature: gene Location: 685358-685492 bp Feature: gene Location: 685789-686805 bp Feature: domain Description: COG3178 Location: 685792-686791 bp Feature: domain Description: COG3178 Location: 685792 -686791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: KK213228.1 Pseudomonas aeruginosa BWH054 genomic scaffold adTyv-supercont1.6, whole genome shotgun sequence (592463 bp)
Overview 1 RT 1: 485902-493017 bp Neighborhood of RT #1 [485902, 493028] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Feature: gene Location: 485902-486543 bp Feature: domain Description: clpP Location: 485956-486532 bp Feature: domain Description: clpP Location: 485956-48653 2 bp Feature: gene Location: 486637-487947 bp Feature: domain Description: tig Location: 486640-487918 bp Feature: domain Description: tig Location: 486640-487918 bp Feature: gene Location: 488077-489780 bp Feature: RT Description: RVT_N Location: 488134-488377 bp Feature: RT Description: RVT_N Location: 48813 4-4883 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488422-489058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488422-489058 bp Feature: domain Description: GIIM Note: maturase Location: 489109-489343 bp Feature: domain Description: GIIM Note: maturase Location: 489109-4893 43 bp Feature: domain Description: HNH Note: nucleases Location: 489595-489733 bp Feature: domain Description: HNH Note: nucleases Location: 489595-48973 3 bp Feature: gene Location: 491034-491741 bp Feature: domain Description: OmpR Location: 491058-491724 bp Feature: domain Description: OmpR Location: 491058-491724 bp Feature: gene Location: 491742-493028 bp Feature: domain Description: PRK10604 Location: 491745-493017 bp Feature: domain Description: PRK10604 Location: 491745-493 017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional)