myRT

myRT report for GCA_000629525.1_Pseu_aeru_BWH053_V1

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Seq: KK213240.1 Pseudomonas aeruginosa BWH053 genomic scaffold adTyt-supercont1.4, whole genome shotgun sequence (710615 bp)
Overview 1 RT 1: 625484-636176 bp 2 RT 2: 652435-660629 bp Neighborhood of RT #1 [625484, 636178] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [652435, 660643] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 625484-626242 bp Feature: gene Location: 626319-627413 bp Feature: domain Description: INT_Rci_Hp1_C Location: 626829-627330 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 626829-627330 bp Feature: gene Location: 627715-629400 bp Feature: RT Description: RVT_N Location: 627772-628012 bp Feature: RT Description: RVT_N Location: 627772-62801 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628060-628696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628060-628696 bp Feature: domain Description: GIIM Note: maturase Location: 628750-628981 bp Feature: domain Description: GIIM Note: maturase Location: 628750-628981 bp Feature: domain Description: HNH Note: nucleases Location: 629233-629371 bp Feature: domain Description: HNH Note: nucleases Location: 629233-629371 bp Feature: gene Location: 630481-634218 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 630589-631246 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 630589-631 246 bp Feature: domain Description: PRK09776 Location: 631459-631930 bp Feature: domain Description: PRK09776 Location: 631 459-631 930 bp Feature: domain Description: PAS Location: 631975-632512 bp Feature: domain Description: PAS Location: 631 975-63251 2 bp Feature: domain Description: PRK10060 Location: 632521-634168 bp Feature: domain Description: PRK1 0060 Location: 632521 -6341 68 bp Feature: gene Location: 634325-636178 bp Feature: domain Description: PRK05658 Location: 634337-636176 bp Feature: domain Description: PRK05658 Location: 634337-6361 76 bp Feature: gene Location: 652435-653727 bp Feature: domain Description: PRK10770 Location: 652525-653719 bp Feature: domain Description: PRK1 0770 Location: 652525-65371 9 bp Feature: gene Location: 653708-656509 bp Feature: domain Description: LptD Location: 653903-656495 bp Feature: domain Description: LptD Location: 653903-656495 bp Feature: gene Location: 656642-657952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656645-657221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656645-657221 bp Feature: domain Description: YkfC Location: 657428-657581 bp Feature: domain Description: YkfC Location: 657428-657581 bp Feature: domain Description: HNH Note: nucleases Location: 657758-657896 bp Feature: domain Description: HNH Note: nucleases Location: 657758-657896 bp Feature: gene Location: 659196-659330 bp Feature: gene Location: 659627-660643 bp Feature: domain Description: COG3178 Location: 659630-660629 bp Feature: domain Description: COG31 78 Location: 659630-660629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )