myRT

myRT report for GCA_000648595.2_ASM64859v2

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Seq: ADOU02000008.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont27, whole genome shotgun sequence (1178172 bp)
Overview 1 RT 1: 1099332-1109367 bp 2 RT 2: 1159720-1164931 bp Neighborhood of RT #1 [1099332, 1109381] P_ylase 4HBT_3 RVT-GII GIIM PRK09344 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #2 [1159720, 1164936] DDE_Tnp_1_4 RVT-GII RVT-GII Rve PRK06847 Feature: gene Location: 1099332-1101857 bp Feature: domain Description: P_ylase Location: 1099434-1101804 bp Feature: domain Description: P_ylase Location: 1 099434-1 1 01 804 bp Feature: gene Location: 1102025-1102840 bp Feature: domain Description: 4HBT_3 Location: 1102127-1102829 bp Feature: domain Description: 4HBT_3 Location: 1 1 021 27-1 1 02829 bp Feature: gene Location: 1103037-1104413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103364-1103982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 03364-1 1 03982 bp Feature: domain Description: GIIM Note: maturase Location: 1104033-1104243 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 04033-1 1 04243 bp Feature: gene Location: 1104886-1106502 bp Feature: domain Description: PRK09344 Location: 1104925-1106482 bp Feature: domain Description: PRK09344 Location: 1 1 04925-1 1 06482 bp Feature: gene Location: 1106787-1109381 bp Feature: domain Description: TPR_12 Location: 1106889-1107096 bp Feature: domain Description: TPR_1 2 Location: 1 1 06889-1 1 07096 bp Feature: domain Description: TPR_12 Location: 1107135-1107348 bp Feature: domain Description: TPR_1 2 Location: 1 1 071 35-1 1 07348 bp Feature: domain Description: TPR_12 Location: 1107375-1107597 bp Feature: domain Description: TPR_1 2 Location: 1 1 07375-1 1 07597 bp Feature: domain Description: TPR_10 Location: 1107633-1107717 bp Feature: domain Description: TPR_1 0 Location: 1 1 07633-1 1 0771 7 bp Feature: domain Description: CHAT Location: 1108350-1109367 bp Feature: domain Description: CHAT Location: 1 1 08350-1 1 09367 bp Feature: gene Location: 1159720-1160124 bp Feature: gene Location: 1160297-1160752 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1160333-1160507 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 1 60333-1 1 60507 bp Feature: gene Location: 1160851-1161537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160854-1161160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 60854-1 1 61 1 60 bp Feature: gene Location: 1161570-1161842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161573-1161831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 61 573-1 1 61 831 bp Feature: gene Location: 1162754-1163371 bp Feature: domain Description: Rve Location: 1162859-1163102 bp Feature: domain Description: Rve Location: 1 1 62859-1 1 631 02 bp Feature: gene Location: 1163803-1164936 bp Feature: domain Description: PRK06847 Location: 1163806-1164931 bp Feature: domain Description: PRK06847 Location: 1 1 63806-1 1 64931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P_ylase (TIGR02093), 4HBT_3 (pfam13622), RVT-GII, GIIM (pfam08388), PRK09344 (phosphoenolpyruvate carboxykinase), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), DDE_Tnp_1_4 (pfam13701), Rve (COG3316)
PRK06847 (hypothetical protein; Provisional)

Seq: ADOU02000004.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont23, whole genome shotgun sequence (4075193 bp)
Overview 1 RT 1: 2901689-2907332 bp Neighborhood of RT #1 [2901689, 2907343] RhaT COG4249 PG_binding_1 RVT-GII GIIM COG3514 cysK Feature: gene Location: 2901689-2902540 bp Feature: domain Description: RhaT Location: 2901698-2902511 bp Feature: domain Description: RhaT Location: 2 901698-2 902 511 bp Feature: gene Location: 2902583-2904169 bp Feature: domain Description: COG4249 Location: 2902808-2903585 bp Feature: domain Description: COG42 49 Location: 2 902 808-2 903585 bp Feature: domain Description: PG_binding_1 Location: 2903819-2903975 bp Feature: domain Description: PG_binding_1 Location: 2 903819-2 903975 bp Feature: gene Location: 2904267-2905424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904375-2904993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 904375-2 904993 bp Feature: domain Description: GIIM Note: maturase Location: 2905044-2905254 bp Feature: domain Description: GIIM Note: maturase Location: 2 905044-2 9052 54 bp Feature: gene Location: 2906123-2906362 bp Feature: domain Description: COG3514 Location: 2906168-2906351 bp Feature: domain Description: COG3514 Location: 2 906168-2 906351 bp Feature: gene Location: 2906366-2907343 bp Feature: domain Description: cysK Location: 2906438-2907332 bp Feature: domain Description: cysK Location: 2 906438-2 907332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), COG4249 (Uncharacterized protein, contains caspase domain ), PG_binding_1 (pfam01471), RVT-GII, GIIM (pfam08388), COG3514 (Uncharacterized conserved protein, DUF4415 family ), cysK (TIGR01139)

Seq: ADOU02000005.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont24, whole genome shotgun sequence (1696958 bp)
Overview 1 RT 1: 1077098-1082678 bp 2 RT 2: 1258667-1264746 bp 3 RT 3: 1519204-1525676 bp 4 RT 4: 1607732-1614515 bp Neighborhood of RT #1 [1077098, 1082678] PGDH_like_1 RVT-GII GIIM ErfK Neighborhood of RT #2 [1258667, 1265021] SDR_a4 AmpC RVT-GII GIIM DLH HTH_MARR Neighborhood of RT #3 [1519204, 1525681] Tra5 HTH_Tnp_1 RVT-GII GIIM trpD Neighborhood of RT #4 [1607732, 1614515] PRK06215 RVT-GII GIIM LptD Feature: gene Location: 1077098-1077313 bp Feature: gene Location: 1077445-1078407 bp Feature: domain Description: PGDH_like_1 Location: 1077460-1078381 bp Feature: domain Description: PGDH_like_1 Location: 1077460-10783 81 bp Feature: gene Location: 1078488-1079864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078815-1079433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078815-107943 3 bp Feature: domain Description: GIIM Note: maturase Location: 1079484-1079694 bp Feature: domain Description: GIIM Note: maturase Location: 1079484-1079694 bp Feature: gene Location: 1080340-1081545 bp Feature: domain Description: ErfK Location: 1080700-1081399 bp Feature: domain Description: ErfK Location: 1080700-10813 99 bp Feature: gene Location: 1081818-1082678 bp Feature: gene Location: 1258667-1259518 bp Feature: domain Description: SDR_a4 Location: 1258676-1259447 bp Feature: domain Description: SDR_a4 Location: 1258676-1259447 bp Feature: gene Location: 1259636-1260904 bp Feature: domain Description: AmpC Location: 1259642-1260851 bp Feature: domain Description: AmpC Location: 1259642-1260851 bp Feature: gene Location: 1260999-1262375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1261326-1261944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12613 26-1261944 bp Feature: domain Description: GIIM Note: maturase Location: 1261995-1262205 bp Feature: domain Description: GIIM Note: maturase Location: 1261995-1262205 bp Feature: gene Location: 1262891-1263778 bp Feature: domain Description: DLH Location: 1263071-1263764 bp Feature: domain Description: DLH Location: 1263 071-1263 764 bp Feature: gene Location: 1264443-1265021 bp Feature: domain Description: HTH_MARR Location: 1264512-1264746 bp Feature: domain Description: HTH_MARR Location: 1264512-1264746 bp Feature: gene Location: 1519204-1519980 bp Feature: domain Description: Tra5 Location: 1519213-1519858 bp Feature: domain Description: Tra5 Location: 1519213 -1519858 bp Feature: gene Location: 1520054-1520359 bp Feature: domain Description: HTH_Tnp_1 Location: 1520111-1520318 bp Feature: domain Description: HTH_Tnp_1 Location: 1520111-15203 18 bp Feature: gene Location: 1520485-1521729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520686-1521343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520686-15213 43 bp Feature: domain Description: GIIM Note: maturase Location: 1521421-1521649 bp Feature: domain Description: GIIM Note: maturase Location: 1521421-1521649 bp Feature: gene Location: 1523238-1523471 bp Feature: gene Location: 1524668-1525681 bp Feature: domain Description: trpD Location: 1524680-1525676 bp Feature: domain Description: trpD Location: 1524680-1525676 bp Feature: gene Location: 1607732-1608262 bp Feature: domain Description: PRK06215 Location: 1607735-1608257 bp Feature: domain Description: PRK06215 Location: 160773 5-1608257 bp Feature: gene Location: 1608913-1609206 bp Feature: gene Location: 1609336-1610565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609537-1610194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160953 7-1610194 bp Feature: domain Description: GIIM Note: maturase Location: 1610269-1610473 bp Feature: domain Description: GIIM Note: maturase Location: 1610269-1610473 bp Feature: gene Location: 1611366-1613732 bp Feature: domain Description: LptD Location: 1611468-1613655 bp Feature: domain Description: LptD Location: 1611468-1613 655 bp Feature: gene Location: 1614207-1614515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDH_like_1 (cd12169), RVT-GII, GIIM (pfam08388), ErfK (COG1376), SDR_a4 (cd05266), AmpC (COG1680), DLH (pfam01738), HTH_MARR (smart00347), Tra5 (COG2801), HTH_Tnp_1 (pfam01527)
trpD (TIGR01245), PRK06215 (hypothetical protein; Provisional), LptD (COG1452)

Seq: ADOU02000006.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont25, whole genome shotgun sequence (30058 bp)
Overview 1 RT 1: 518-5313 bp Neighborhood of RT #1 [518, 5313] RVT-GII group_II_RT_mat Feature: gene Location: 518-820 bp Feature: gene Location: 1509-2126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1764-2085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1764 -2085 bp Feature: gene Location: 2175-2705 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2184-2598 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2184 -2598 bp Feature: gene Location: 2998-5313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: ADOU02000007.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont26, whole genome shotgun sequence (1854659 bp)
Overview 1 RT 1: 156117-161604 bp 2 RT 2: 1326406-1332495 bp Neighborhood of RT #1 [156117, 161627] BaeS COG4567 RVT-GII GIIM CdnL PreA DUF3470 Neighborhood of RT #2 [1326406, 1332495] PRK08242 fadJ RVT-GII GIIM Feature: gene Location: 156117-157514 bp Feature: domain Description: BaeS Location: 156414-157485 bp Feature: domain Description: BaeS Location: 15 6414-15 7485 bp Feature: gene Location: 157504-158037 bp Feature: domain Description: COG4567 Location: 157510-158035 bp Feature: domain Description: COG45 67 Location: 15 75 10-15 8035 bp Feature: gene Location: 158299-159675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158626-159244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 8626-15 9244 bp Feature: domain Description: GIIM Note: maturase Location: 159295-159505 bp Feature: domain Description: GIIM Note: maturase Location: 15 9295 -15 95 05 bp Feature: gene Location: 160156-160944 bp Feature: domain Description: CdnL Location: 160354-160831 bp Feature: domain Description: CdnL Location: 16035 4-160831 bp Feature: gene Location: 161289-161627 bp Feature: domain Description: PreA Location: 161301-161475 bp Feature: domain Description: PreA Location: 161301-161475 bp Feature: domain Description: DUF3470 Location: 161481-161604 bp Feature: domain Description: DUF3470 Location: 161481-161604 bp Feature: gene Location: 1326406-1327614 bp Feature: domain Description: PRK08242 Location: 1326409-1327612 bp Feature: domain Description: PRK08242 Location: 1326409-1327612 bp Feature: gene Location: 1327635-1329848 bp Feature: domain Description: fadJ Location: 1327647-1329819 bp Feature: domain Description: fadJ Location: 1327647-1329819 bp Feature: gene Location: 1330321-1331697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330648-1331266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330648-1331266 bp Feature: domain Description: GIIM Note: maturase Location: 1331317-1331527 bp Feature: domain Description: GIIM Note: maturase Location: 1331317-13315 27 bp Feature: gene Location: 1331889-1332143 bp Feature: gene Location: 1332172-1332495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-GII, GIIM (pfam08388), CdnL (COG1329), PreA (COG1146), DUF3470 (pfam11953), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154)

Seq: ADOU02000001.1 Bradyrhizobium diazoefficiens SEMIA 5080 Cont20, whole genome shotgun sequence (114707 bp)
Overview 1 RT 1: 88594-95268 bp Neighborhood of RT #1 [88594, 95268] COG3464 COG3464 COG5659 RVT-GII DDE_5 Feature: gene Location: 88594-90150 bp Feature: domain Description: COG3464 Location: 88708-88867 bp Feature: domain Description: COG346 4 Location: 88708-8886 7 bp Feature: domain Description: COG3464 Location: 88942-90139 bp Feature: domain Description: COG346 4 Location: 88942-90139 bp Feature: gene Location: 90542-91009 bp Feature: domain Description: COG5659 Location: 90725-90893 bp Feature: domain Description: COG56 59 Location: 90725-90893 bp Feature: gene Location: 91809-93284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92217-92907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92217-92907 bp Feature: gene Location: 93444-94766 bp Feature: domain Description: DDE_5 Location: 93498-94287 bp Feature: domain Description: DDE_5 Location: 93498-94287 bp Feature: gene Location: 94843-95268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), COG5659 (SRSO17 transposase ), RVT-GII, DDE_5 (pfam13546)