myRT

myRT report for GCA_000661935.1_ASM66193v1

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Seq: CP007569.1 Bradyrhizobium japonicum SEMIA 5079 genome (9583027 bp)
Overview 1 RT 1: 376-5775 bp 2 RT 2: 200854-209824 bp 3 RT 3: 218192-223809 bp 4 RT 4: 294154-300738 bp 5 RT 5: 395852-402198 bp 6 RT 6: 8501903-8507294 bp 7 RT 7: 8667090-8674125 bp 8 RT 8: 8761731-8766947 bp 9 RT 9: 8772628-8778203 bp 10 RT 10: 9350970-9360610 bp 11 RT 11: 9398760-9405269 bp 12 RT 12: 9407669-9412853 bp Neighborhood of RT #1 [376, 5780] RVT-GII CpaC Neighborhood of RT #2 [200854, 209829] LptD RVT-GII HTH_29 rve RVT-GII GIIM PRK06215 Neighborhood of RT #3 [218192, 223809] rSAM_ocin_1 RVT-GII DDE_5 Neighborhood of RT #4 [294154, 300860] trpD RVT-GII GIIM HTH_Tnp_1 Tra5 Neighborhood of RT #5 [395852, 402198] PhyH MetG RVT-GII ARO8 Neighborhood of RT #6 [8501903, 8507323] PreA DUF3470 CdnL RVT-GII GIIM COG4567 BaeS Neighborhood of RT #7 [8667090, 8674139] rve rve RVT-GII GIIM DUF772 DDE_Tnp_1 DDE_Tnp_1 HU_IHF Neighborhood of RT #8 [8761731, 8766947] PRK06847 Rve RVT-GII RVT-GII DDE_Tnp_1_4 Neighborhood of RT #9 [8772628, 8778203] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #10 [9350970, 9360645] COG4119 Metallophos_2 RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM COG3547 HAMP PAS_7 NtrY Neighborhood of RT #11 [9398760, 9405334] DUF4096 RVT-GII DDE_5 DUF1521 DUF1521 Neighborhood of RT #12 [9407669, 9413452] Rve PRK06215 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 376-957 bp Ori: AHY48445.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-592 bp Feature: gene Location: 1250-3565 bp Feature: gene Location: 4434-5780 bp Ori: AHY48447.1 Gene: rhcC2 Feature: domain Description: CpaC Location: 4512-5775 bp Feature: domain Description: CpaC Location: 451 2-5775 bp Feature: gene Location: 200854-201279 bp Feature: gene Location: 202582-204948 bp Ori: AHY48595.1 Feature: domain Description: LptD Location: 202684-204871 bp Feature: domain Description: LptD Location: 202684-204871 bp Feature: gene Location: 205749-206393 bp Ori: AHY48596.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205950-206373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205950-206373 bp Feature: gene Location: 206445-207482 bp Ori: AHY48597.1 Feature: domain Description: HTH_29 Location: 206487-206664 bp Feature: domain Description: HTH_29 Location: 206487-206664 bp Feature: domain Description: rve Location: 206928-207291 bp Feature: domain Description: rve Location: 206928-207291 bp Feature: gene Location: 207629-208225 bp Ori: AHY48598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207635-207854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207635-207854 bp Feature: domain Description: GIIM Note: maturase Location: 207929-208133 bp Feature: domain Description: GIIM Note: maturase Location: 207929-2081 33 bp Feature: gene Location: 208355-208648 bp Feature: gene Location: 209299-209829 bp Ori: AHY48600.1 Feature: domain Description: PRK06215 Location: 209302-209824 bp Feature: domain Description: PRK0621 5 Location: 209302-209824 bp Feature: gene Location: 218192-218410 bp Feature: gene Location: 218724-219977 bp Ori: AHY48611.1 Feature: domain Description: rSAM_ocin_1 Location: 218730-219885 bp Feature: domain Description: rSAM_ocin_1 Location: 21 8730-21 9885 bp Feature: gene Location: 220355-221830 bp Ori: AHY48612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220763-221453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220763-221 453 bp Feature: gene Location: 221814-223277 bp Ori: AHY48613.1 Feature: domain Description: DDE_5 Location: 221892-222684 bp Feature: domain Description: DDE_5 Location: 221 892-222684 bp Feature: gene Location: 223366-223809 bp Feature: gene Location: 294154-295167 bp Ori: AHY48673.1 Feature: domain Description: trpD Location: 294166-295162 bp Feature: domain Description: trpD Location: 2941 66-2951 62 bp Feature: gene Location: 296364-296597 bp Feature: gene Location: 298052-299350 bp Ori: AHY48675.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298307-298964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298307-298964 bp Feature: domain Description: GIIM Note: maturase Location: 299042-299270 bp Feature: domain Description: GIIM Note: maturase Location: 299042-299270 bp Feature: gene Location: 299756-300010 bp Ori: AHY48676.1 Feature: domain Description: HTH_Tnp_1 Location: 299762-299969 bp Feature: domain Description: HTH_Tnp_1 Location: 299762-299969 bp Feature: gene Location: 300084-300860 bp Ori: AHY48677.1 Feature: domain Description: Tra5 Location: 300093-300738 bp Feature: domain Description: Tra5 Location: 300093-300738 bp Feature: gene Location: 395852-396595 bp Ori: AHY48743.1 Feature: domain Description: PhyH Location: 395858-396434 bp Feature: domain Description: PhyH Location: 395858-396434 bp Feature: gene Location: 396797-398398 bp Ori: AHY48744.1 Feature: domain Description: MetG Location: 396944-398069 bp Feature: domain Description: MetG Location: 396944-398069 bp Feature: gene Location: 398728-400203 bp Ori: AHY48745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399136-399826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3991 36-399826 bp Feature: gene Location: 400375-401580 bp Ori: AHY48746.1 Feature: domain Description: ARO8 Location: 400477-401560 bp Feature: domain Description: ARO8 Location: 400477-401 560 bp Feature: gene Location: 401737-402198 bp Feature: gene Location: 8501903-8502241 bp Ori: AHY56120.1 Gene: fdxA Feature: domain Description: PreA Location: 8501915-8502089 bp Feature: domain Description: PreA Location: 8501 91 5-8502089 bp Feature: domain Description: DUF3470 Location: 8502095-8502218 bp Feature: domain Description: DUF3470 Location: 8502095-850221 8 bp Feature: gene Location: 8502585-8503376 bp Ori: AHY56121.1 Feature: domain Description: CdnL Location: 8502786-8503263 bp Feature: domain Description: CdnL Location: 8502786-8503263 bp Feature: gene Location: 8503858-8505234 bp Ori: AHY56122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8504185-8504803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85041 85-8504803 bp Feature: domain Description: GIIM Note: maturase Location: 8504854-8505064 bp Feature: domain Description: GIIM Note: maturase Location: 8504854-8505064 bp Feature: gene Location: 8505457-8505990 bp Ori: AHY56123.1 Gene: actR Feature: domain Description: COG4567 Location: 8505463-8505988 bp Feature: domain Description: COG4567 Location: 8505463-8505988 bp Feature: gene Location: 8505980-8507323 bp Ori: AHY56124.1 Feature: domain Description: BaeS Location: 8506250-8507294 bp Feature: domain Description: BaeS Location: 8506250-8507294 bp Feature: gene Location: 8667090-8667392 bp Ori: AHY56282.1 Feature: domain Description: rve Location: 8667093-8667291 bp Feature: domain Description: rve Location: 8667093-8667291 bp Feature: gene Location: 8667759-8669255 bp Ori: AHY56283.1 Feature: domain Description: rve Location: 8668251-8668572 bp Feature: domain Description: rve Location: 8668251 -8668572 bp Feature: gene Location: 8670548-8671924 bp Ori: AHY56284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8670875-8671493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8670875-8671 493 bp Feature: domain Description: GIIM Note: maturase Location: 8671544-8671754 bp Feature: domain Description: GIIM Note: maturase Location: 8671 544-8671 754 bp Feature: gene Location: 8672175-8673623 bp Ori: AHY56285.1 Feature: domain Description: DUF772 Location: 8672436-8672652 bp Feature: domain Description: DUF772 Location: 8672436-8672652 bp Feature: domain Description: DDE_Tnp_1 Location: 8673105-8673324 bp Feature: domain Description: DDE_Tnp_1 Location: 86731 05-8673324 bp Feature: domain Description: DDE_Tnp_1 Location: 8673396-8673510 bp Feature: domain Description: DDE_Tnp_1 Location: 8673396-867351 0 bp Feature: gene Location: 8673861-8674139 bp Ori: AHY56286.1 Feature: domain Description: HU_IHF Location: 8673876-8674125 bp Feature: domain Description: HU_IHF Location: 8673876-86741 25 bp Feature: gene Location: 8761731-8762864 bp Ori: AHY56377.1 Feature: domain Description: PRK06847 Location: 8761734-8762859 bp Feature: domain Description: PRK06847 Location: 8761 734-8762859 bp Feature: gene Location: 8763296-8763913 bp Ori: AHY56378.1 Feature: domain Description: Rve Location: 8763401-8763644 bp Feature: domain Description: Rve Location: 8763401 -8763644 bp Feature: gene Location: 8764825-8765097 bp Ori: AHY56379.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8764828-8765086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8764828-8765086 bp Feature: gene Location: 8765130-8765816 bp Ori: AHY56380.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8765133-8765439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87651 33-8765439 bp Feature: gene Location: 8765915-8766370 bp Ori: AHY56381.1 Feature: domain Description: DDE_Tnp_1_4 Location: 8765951-8766125 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 8765951 -87661 25 bp Feature: gene Location: 8766543-8766947 bp Feature: gene Location: 8772628-8773296 bp Ori: AHY56389.1 Feature: domain Description: PHA02518 Location: 8772637-8773234 bp Feature: domain Description: PHA0251 8 Location: 8772637-8773234 bp Feature: gene Location: 8773740-8774576 bp Ori: AHY56390.1 Feature: domain Description: LomR Location: 8773776-8774487 bp Feature: domain Description: LomR Location: 8773776-8774487 bp Feature: gene Location: 8774632-8775840 bp Ori: AHY56391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8774803-8775466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8774803-8775466 bp Feature: domain Description: GIIM Note: maturase Location: 8775532-8775754 bp Feature: domain Description: GIIM Note: maturase Location: 8775532-8775754 bp Feature: gene Location: 8776077-8776802 bp Ori: AHY56392.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8776095-8776530 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8776095-8776530 bp Feature: gene Location: 8777940-8778203 bp Feature: gene Location: 9350970-9351440 bp Ori: AHY56893.1 Feature: domain Description: COG4119 Location: 9350976-9351420 bp Feature: domain Description: COG41 1 9 Location: 9350976-9351 420 bp Feature: gene Location: 9351437-9351901 bp Ori: AHY56894.1 Feature: domain Description: Metallophos_2 Location: 9351449-9351857 bp Feature: domain Description: Metallophos_2 Location: 9351 449-9351 857 bp Feature: gene Location: 9352848-9353465 bp Ori: AHY56895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9353049-9353463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9353049-9353463 bp Feature: gene Location: 9353623-9355098 bp Ori: AHY56896.1 Feature: domain Description: Resolvase Location: 9353635-9354076 bp Feature: domain Description: Resolvase Location: 9353635-9354076 bp Feature: domain Description: Recombinase Location: 9354163-9354523 bp Feature: domain Description: Recombinase Location: 93541 63-9354523 bp Feature: domain Description: Zn_ribbon_recom Location: 9354565-9354751 bp Feature: domain Description: Zn_ribbon_recom Location: 9354565-9354751 bp Feature: gene Location: 9355239-9355568 bp Ori: AHY56897.1 Feature: domain Description: PHA00617 Location: 9355365-9355551 bp Feature: domain Description: PHA0061 7 Location: 9355365-9355551 bp Feature: gene Location: 9355703-9356299 bp Ori: AHY56898.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9355706-9355928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9355706-9355928 bp Feature: domain Description: GIIM Note: maturase Location: 9356003-9356207 bp Feature: domain Description: GIIM Note: maturase Location: 9356003-9356207 bp Feature: gene Location: 9356491-9357204 bp Ori: AHY56899.1 Feature: domain Description: COG3547 Location: 9356494-9357148 bp Feature: domain Description: COG3547 Location: 9356494-93571 48 bp Feature: gene Location: 9359164-9360645 bp Ori: AHY56900.1 Feature: domain Description: HAMP Location: 9359776-9360010 bp Feature: domain Description: HAMP Location: 9359776-936001 0 bp Feature: domain Description: PAS_7 Location: 9360121-9360448 bp Feature: domain Description: PAS_7 Location: 93601 21 -9360448 bp Feature: domain Description: NtrY Location: 9360451-9360610 bp Feature: domain Description: NtrY Location: 9360451 -936061 0 bp Feature: gene Location: 9398760-9399131 bp Feature: gene Location: 9398826-9399218 bp Ori: AHY56925.1 Feature: domain Description: DUF4096 Location: 9398850-9399063 bp Feature: domain Description: DUF4096 Location: 9398850-9399063 bp Feature: gene Location: 9399974-9401449 bp Ori: AHY56926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9400382-9401072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9400382-9401 072 bp Feature: gene Location: 9401547-9402860 bp Ori: AHY56927.1 Feature: domain Description: DDE_5 Location: 9401589-9402381 bp Feature: domain Description: DDE_5 Location: 9401 589-9402381 bp Feature: gene Location: 9404078-9405334 bp Ori: AHY56928.1 Feature: domain Description: DUF1521 Location: 9404132-9404633 bp Feature: domain Description: DUF1 521 Location: 94041 32-9404633 bp Feature: domain Description: DUF1521 Location: 9404768-9405269 bp Feature: domain Description: DUF1 521 Location: 9404768-9405269 bp Feature: gene Location: 9407669-9408328 bp Ori: AHY56930.1 Feature: domain Description: Rve Location: 9407672-9408194 bp Feature: domain Description: Rve Location: 9407672-94081 94 bp Feature: gene Location: 9408887-9409423 bp Ori: AHY56931.1 Feature: domain Description: PRK06215 Location: 9408890-9409421 bp Feature: domain Description: PRK0621 5 Location: 9408890-9409421 bp Feature: gene Location: 9410540-9411157 bp Ori: AHY56932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9410741-9411155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 0741 -941 1 1 55 bp Feature: gene Location: 9411255-9411584 bp Ori: AHY56933.1 Feature: domain Description: PHA00617 Location: 9411381-9411567 bp Feature: domain Description: PHA0061 7 Location: 941 1 381 -941 1 567 bp Feature: gene Location: 9411725-9413452 bp Ori: AHY56934.1 Feature: domain Description: Resolvase Location: 9411737-9412178 bp Feature: domain Description: Resolvase Location: 941 1 737-941 21 78 bp Feature: domain Description: Recombinase Location: 9412265-9412625 bp Feature: domain Description: Recombinase Location: 941 2265-941 2625 bp Feature: domain Description: Zn_ribbon_recom Location: 9412667-9412853 bp Feature: domain Description: Zn_ribbon_recom Location: 941 2667-941 2853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CpaC (COG4964), LptD (COG1452), HTH_29 (pfam13551), rve (pfam00665), GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional), rSAM_ocin_1 (TIGR03975), DDE_5 (pfam13546), trpD (TIGR01245)
HTH_Tnp_1 (pfam01527), Tra5 (COG2801), PhyH (pfam05721), MetG (COG0143), ARO8 (COG1167), PreA (COG1146), DUF3470 (pfam11953), CdnL (COG1329), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), BaeS (COG0642)
DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), HU_IHF (cl00257), PRK06847 (hypothetical protein; Provisional), Rve (COG3316), DDE_Tnp_1_4 (pfam13701), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), DDE_Tnp_IS66 (pfam03050), COG4119 (Predicted NTP pyrophosphohydrolase, NUDIX family )
Metallophos_2 (pfam12850), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PHA00617 (ribbon-helix-helix domain containing protein), COG3547 (Transposase ), HAMP (smart00304), PAS_7 (pfam12860), NtrY (COG5000), DUF4096 (pfam13340)
DUF1521 (pfam07481)