myRT

myRT report for GCA_000685055.1_ASM68505v1

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Seq: BAYC01000035.1 Burkholderia fungorum NBRC 102489 DNA, contig: BFU01S_CON01302, whole genome shotgun sequence (168351 bp)
Overview 1 RT 1: 71546-81573 bp Neighborhood of RT #1 [71546, 81587] lambda_lys_like VgrG DUF2345 RVT-Retrons GlxA GyrI-like 2A0305 Feature: gene Location: 71546-73672 bp Feature: domain Description: lambda_lys_like Location: 73199-73655 bp Feature: domain Description: lambda_lys_like Location: 731 99-73655 bp Feature: gene Location: 73685-76450 bp Feature: domain Description: VgrG Location: 73727-75587 bp Feature: domain Description: VgrG Location: 73727-75587 bp Feature: domain Description: DUF2345 Location: 75701-76148 bp Feature: domain Description: DUF2345 Location: 75701 -761 48 bp Feature: gene Location: 77013-78380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77478-78117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77478-781 1 7 bp Feature: gene Location: 79061-79990 bp Feature: domain Description: GlxA Location: 79145-79469 bp Feature: domain Description: GlxA Location: 791 45-79469 bp Feature: domain Description: GyrI-like Location: 79523-79985 bp Feature: domain Description: GyrI-like Location: 79523-79985 bp Feature: gene Location: 80184-81587 bp Feature: domain Description: 2A0305 Location: 80229-81573 bp Feature: domain Description: 2A0305 Location: 80229-81 573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lambda_lys_like, VgrG (COG3501), DUF2345 (pfam10106), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: BAYC01000027.1 Burkholderia fungorum NBRC 102489 DNA, contig: BFU01S_CON01001, whole genome shotgun sequence (298370 bp)
Overview 1 RT 1: 173695-177054 bp Neighborhood of RT #1 [173695, 177095] RVT-GII GIIM STE14 Feature: gene Location: 173695-173907 bp Feature: gene Location: 173986-174198 bp Feature: gene Location: 174453-175778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174744-175407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174744-175407 bp Feature: domain Description: GIIM Note: maturase Location: 175479-175692 bp Feature: domain Description: GIIM Note: maturase Location: 175479-175692 bp Feature: gene Location: 176155-176469 bp Feature: gene Location: 176436-177095 bp Feature: domain Description: STE14 Location: 176565-177054 bp Feature: domain Description: STE14 Location: 176565-177054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), STE14 (COG2020)

Seq: BAYC01000026.1 Burkholderia fungorum NBRC 102489 DNA, contig: BFU01S_CON00903, whole genome shotgun sequence (132229 bp)
Overview 1 RT 1: 75293-81414 bp Neighborhood of RT #1 [75293, 81470] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 75293-75784 bp Feature: domain Description: ilvH Location: 75296-75773 bp Feature: domain Description: ilvH Location: 75296-75773 bp Feature: gene Location: 75932-76948 bp Feature: domain Description: PRK05479 Location: 75935-76916 bp Feature: domain Description: PRK05479 Location: 7593 5-76916 bp Feature: gene Location: 78219-79820 bp Feature: RT Description: RVT_N Location: 78222-78420 bp Feature: RT Description: RVT_N Location: 78222-78420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78465-79113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78465-79113 bp Feature: domain Description: GIIM Note: maturase Location: 79164-79398 bp Feature: domain Description: GIIM Note: maturase Location: 79164-793 98 bp Feature: domain Description: HNHc Note: nucleases Location: 79641-79782 bp Feature: domain Description: HNHc Note: nucleases Location: 79641-79782 bp Feature: gene Location: 79938-80576 bp Feature: domain Description: PRK05305 Location: 79962-80571 bp Feature: domain Description: PRK053 05 Location: 79962-80571 bp Feature: gene Location: 80601-81470 bp Feature: domain Description: PssA Location: 80733-81414 bp Feature: domain Description: PssA Location: 8073 3 -81414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: BAYC01000018.1 Burkholderia fungorum NBRC 102489 DNA, contig: BFU01S_CON00703, whole genome shotgun sequence (78270 bp)
Overview 1 RT 1: 42618-51386 bp Neighborhood of RT #1 [42618, 51421] argJ PRK12904 RVT_N RVT-GII GIIM HNHc DciA LpxC Feature: gene Location: 42618-43961 bp Feature: domain Description: argJ Location: 42759-43959 bp Feature: domain Description: argJ Location: 4 2759-4 3959 bp Feature: gene Location: 44011-46821 bp Feature: domain Description: PRK12904 Location: 44023-46813 bp Feature: domain Description: PRK12904 Location: 4 4 023-4 6813 bp Feature: gene Location: 47022-48722 bp Feature: RT Description: RVT_N Location: 47079-47316 bp Feature: RT Description: RVT_N Location: 4 7079-4 7316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47367-48015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7367-4 8015 bp Feature: domain Description: GIIM Note: maturase Location: 48069-48300 bp Feature: domain Description: GIIM Note: maturase Location: 4 8069-4 8300 bp Feature: domain Description: HNHc Note: nucleases Location: 48516-48684 bp Feature: domain Description: HNHc Note: nucleases Location: 4 8516-4 8684 bp Feature: gene Location: 49938-50423 bp Feature: domain Description: DciA Location: 50007-50262 bp Feature: domain Description: DciA Location: 50007-50262 bp Feature: gene Location: 50504-51421 bp Feature: domain Description: LpxC Location: 50507-51386 bp Feature: domain Description: LpxC Location: 50507-51386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argJ (PRK05388), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DciA, LpxC (pfam03331)

Seq: BAYC01000011.1 Burkholderia fungorum NBRC 102489 DNA, contig: BFU01S_CON00402, whole genome shotgun sequence (332913 bp)
Overview 1 RT 1: 246524-249903 bp Neighborhood of RT #1 [246524, 250457] IS5 RVT_N RVT-GII Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 246524-247120 bp Feature: domain Description: IS5 Location: 246713-247079 bp Feature: domain Description: IS5 Location: 246713-247079 bp Feature: gene Location: 247406-247636 bp Feature: gene Location: 247677-248444 bp Feature: RT Description: RVT_N Location: 247752-247989 bp Feature: RT Description: RVT_N Location: 24775 2-247989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248040-248418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248040-248418 bp Feature: gene Location: 248560-248742 bp Feature: gene Location: 248739-250457 bp Feature: domain Description: Resolvase Location: 248760-249198 bp Feature: domain Description: Resolvase Location: 248760-249198 bp Feature: domain Description: Recombinase Location: 249294-249654 bp Feature: domain Description: Recombinase Location: 249294-24965 4 bp Feature: domain Description: Zn_ribbon_recom Location: 249699-249903 bp Feature: domain Description: Zn_ribbon_recom Location: 249699-249903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)