myRT

myRT report for GCA_000685765.2_BMG5.23v1

Download annotations/find similar RTs

Seq: JDWE01000027.1 Frankia sp. BMG5.23 BMG523Draft_scaffold_26.27, whole genome shotgun sequence (64811 bp)
Overview 1 RT 1: 3-2580 bp Neighborhood of RT #1 [3, 2594] RVT-GII GIIM Methyltransf_25 CheY Feature: gene Location: 3-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-279 bp Feature: domain Description: GIIM Note: maturase Location: 360-564 bp Feature: domain Description: GIIM Note: maturase Location: 360-564 bp Feature: gene Location: 933-1775 bp Feature: domain Description: Methyltransf_25 Location: 1131-1410 bp Feature: domain Description: Methyltransf_25 Location: 1 1 31 -1 41 0 bp Feature: gene Location: 2208-2594 bp Feature: domain Description: CheY Location: 2217-2580 bp Feature: domain Description: CheY Location: 221 7-2580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), RVT-GII, GIIM (pfam08388), Methyltransf_25 (pfam13649)

Seq: JDWE01000165.1 Frankia sp. BMG5.23 BMG523Draft_scaffold_164.165, whole genome shotgun sequence (1122 bp)
Overview 1 RT 1: 94-1039 bp Neighborhood of RT #1 [94, 1122] RVT-GII Feature: gene Location: 94-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JDWE01000069.1 Frankia sp. BMG5.23 BMG523Draft_scaffold_68.69, whole genome shotgun sequence (18220 bp)
Overview 1 RT 1: 1-4384 bp Neighborhood of RT #1 [1, 4384] DEDD_Tnp_IS110 RVT-GII Feature: gene Location: 1-662 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4-286 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4-286 bp Feature: gene Location: 1187-2377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2189 bp Feature: gene Location: 3180-3428 bp Feature: gene Location: 3941-4384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DEDD_Tnp_IS110 (pfam01548)

Seq: JDWE01000050.1 Frankia sp. BMG5.23 BMG523Draft_scaffold_49.50, whole genome shotgun sequence (31191 bp)
Overview 1 RT 1: 28575-31094 bp Neighborhood of RT #1 [28575, 31189] Methyltransf_19 FldA RVT-GII GIIM Feature: gene Location: 28575-29399 bp Feature: domain Description: Methyltransf_19 Location: 28608-29391 bp Feature: domain Description: Methyltransf_19 Location: 28608-29391 bp Feature: gene Location: 29894-30448 bp Feature: domain Description: FldA Location: 29897-30077 bp Feature: domain Description: FldA Location: 29897-30077 bp Feature: gene Location: 30533-31189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30536-30809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30536-30809 bp Feature: domain Description: GIIM Note: maturase Location: 30890-31094 bp Feature: domain Description: GIIM Note: maturase Location: 30890-31094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_19 (pfam04672), FldA (COG0716), RVT-GII, GIIM (pfam08388)

Seq: JDWE01000110.1 Frankia sp. BMG5.23 BMG523Draft_scaffold_109.110, whole genome shotgun sequence (5510 bp)
Overview 1 RT 1: 1-3361 bp Neighborhood of RT #1 [1, 3429] PinE RVT-GII MFS_LmrB_MDR_like Feature: gene Location: 1-675 bp Feature: domain Description: PinE Location: 49-640 bp Feature: domain Description: PinE Location: 49-640 bp Feature: gene Location: 1090-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1297 bp Feature: gene Location: 1815-1967 bp Feature: gene Location: 1954-3429 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 2041-3361 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 2041-3361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), MFS_LmrB_MDR_like (cd17503)