myRT

myRT report for GCA_000685925.1_ASM68592v1

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Seq: JMLA01000001.1 Methylobacter tundripaludum 21/22 T451DRAFT_scf7180000000002_quiver_dupTrim_4432.1_C, whole genome shotgun sequence (4665210 bp)
Overview 1 RT 1: 2833493-2839784 bp 2 RT 2: 2855558-2860298 bp 3 RT 3: 4099202-4105818 bp 4 RT 4: 4318611-4321676 bp Neighborhood of RT #1 [2833493, 2839784] RVT_N RVT-GII GIIM HNHc HATPase_c_3 Neighborhood of RT #2 [2855558, 2860684] phage_rel_nuc RVT_N RVT-GII GIIM HNHc bet_lambda Neighborhood of RT #3 [4099202, 4105818] TelA Halogen_Hydrol RVT-Retrons RocR RocR Neighborhood of RT #4 [4318611, 4321714] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 2833493-2834329 bp Feature: gene Location: 2834432-2834854 bp Feature: gene Location: 2835243-2836988 bp Feature: domain Description: RVT_N Location: 2835336-2835579 bp Feature: domain Description: RVT_N Location: 2835336-2835579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835624-2836284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835624-2836284 bp Feature: domain Description: GIIM Note: maturase Location: 2836335-2836569 bp Feature: domain Description: GIIM Note: maturase Location: 2836335-2836569 bp Feature: domain Description: HNHc Note: nucleases Location: 2836788-2836941 bp Feature: domain Description: HNHc Note: nucleases Location: 2836788-2836941 bp Feature: gene Location: 2837566-2838960 bp Feature: domain Description: HATPase_c_3 Location: 2837641-2837893 bp Feature: domain Description: HATPase_c_3 Location: 2837641 -2837893 bp Feature: gene Location: 2839284-2839784 bp Feature: gene Location: 2855558-2855899 bp Feature: gene Location: 2855990-2856688 bp Feature: domain Description: phage_rel_nuc Location: 2856002-2856164 bp Feature: domain Description: phage_rel_nuc Location: 2856002-28561 64 bp Feature: gene Location: 2856953-2858668 bp Feature: domain Description: RVT_N Location: 2857016-2857259 bp Feature: domain Description: RVT_N Location: 285701 6-2857259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857304-2857964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857304-2857964 bp Feature: domain Description: GIIM Note: maturase Location: 2858015-2858249 bp Feature: domain Description: GIIM Note: maturase Location: 285801 5-2858249 bp Feature: domain Description: HNHc Note: nucleases Location: 2858468-2858621 bp Feature: domain Description: HNHc Note: nucleases Location: 2858468-2858621 bp Feature: gene Location: 2858777-2858962 bp Feature: gene Location: 2859710-2860684 bp Feature: domain Description: bet_lambda Location: 2859776-2860298 bp Feature: domain Description: bet_lambda Location: 2859776-2860298 bp Feature: gene Location: 4099202-4100347 bp Feature: domain Description: TelA Location: 4099334-4100321 bp Feature: domain Description: TelA Location: 4099334-41 00321 bp Feature: gene Location: 4100375-4101409 bp Feature: domain Description: Halogen_Hydrol Location: 4100828-4101377 bp Feature: domain Description: Halogen_Hydrol Location: 41 00828-41 01 377 bp Feature: gene Location: 4101690-4103465 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4101825-4102452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 01 825-41 02452 bp Feature: gene Location: 4103823-4105637 bp Feature: domain Description: RocR Location: 4103853-4103985 bp Feature: domain Description: RocR Location: 41 03853-41 03985 bp Feature: domain Description: RocR Location: 4104159-4105623 bp Feature: domain Description: RocR Location: 41 041 59-41 05623 bp Feature: gene Location: 4105687-4105818 bp Feature: gene Location: 4318611-4318796 bp Feature: gene Location: 4318883-4319056 bp Feature: gene Location: 4319083-4321161 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4319296-4319899 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 431 9296-431 9899 bp Feature: domain Description: Cas1_I-II-III Location: 4320163-4321126 bp Feature: domain Description: Cas1 _I-II-III Location: 43201 63-4321 1 26 bp Feature: gene Location: 4321296-4321436 bp Feature: gene Location: 4321448-4321714 bp Feature: domain Description: Cas2_I_II_III Location: 4321454-4321676 bp Feature: domain Description: Cas2_I_II_III Location: 4321 454-4321 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HATPase_c_3 (pfam13589), phage_rel_nuc (TIGR03033), bet_lambda (TIGR01913), TelA (pfam05816), Halogen_Hydrol (pfam10112), RVT-Retrons
RocR (COG3829), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)