myRT

myRT report for GCA_000686065.1_ASM68606v1

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Seq: JMLX01000001.1 Butyrivibrio sp. AE3003 CD00DRAFT_scf7180000000002_quiver_dupTrim_10194.1_C, whole genome shotgun sequence (3464030 bp)
Overview 1 RT 1: 311303-314606 bp 2 RT 2: 808502-814276 bp 3 RT 3: 1762845-1768965 bp 4 RT 4: 2171678-2176585 bp 5 RT 5: 2185580-2189977 bp 6 RT 6: 2897569-2901428 bp Neighborhood of RT #1 [311303, 314626] DDE_Tnp_1_6 RVT-GII GIIM zf-ISL3 HTH_XRE Neighborhood of RT #2 [808502, 814323] FlgE RVT-GII GIIM COG2929 COG5304 Neighborhood of RT #3 [1762845, 1769003] YafY DDE_Tnp_1 RVT-GII GIIM COG3666 DDE_Tnp_1_3 DDE_Tnp_1_6 Neighborhood of RT #4 [2171678, 2176585] Couple_hipA HipA_C RVT-GII GIIM Neighborhood of RT #5 [2185580, 2190015] SpoT PgpB RVT-GII GIIM PAP2_like_4 Neighborhood of RT #6 [2897569, 2901436] RVT-GII GIIM DUF4867 HAD_5NT Feature: gene Location: 311303-311740 bp Feature: domain Description: DDE_Tnp_1_6 Location: 311369-311723 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 31 1 369-31 1 723 bp Feature: gene Location: 312113-312265 bp Feature: gene Location: 312325-313719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312643-313267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 2643-31 3267 bp Feature: domain Description: GIIM Note: maturase Location: 313324-313543 bp Feature: domain Description: GIIM Note: maturase Location: 31 3324-31 3543 bp Feature: gene Location: 313842-314288 bp Feature: domain Description: zf-ISL3 Location: 314055-314181 bp Feature: domain Description: zf-ISL3 Location: 31 4055-31 41 81 bp Feature: gene Location: 314405-314626 bp Feature: domain Description: HTH_XRE Location: 314450-314606 bp Feature: domain Description: HTH_XRE Location: 31 4450-31 4606 bp Feature: gene Location: 808502-811744 bp Feature: domain Description: FlgE Location: 808634-811742 bp Feature: domain Description: FlgE Location: 808634-81 1 742 bp Feature: gene Location: 812078-812230 bp Feature: gene Location: 812290-813684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812608-813232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 2608-81 3232 bp Feature: domain Description: GIIM Note: maturase Location: 813286-813502 bp Feature: domain Description: GIIM Note: maturase Location: 81 3286-81 3502 bp Feature: gene Location: 813905-814087 bp Feature: domain Description: COG2929 Location: 813911-814076 bp Feature: domain Description: COG2929 Location: 81 391 1 -81 4076 bp Feature: gene Location: 814084-814323 bp Feature: domain Description: COG5304 Location: 814123-814276 bp Feature: domain Description: COG5304 Location: 81 41 23-81 4276 bp Feature: gene Location: 1762845-1763780 bp Feature: domain Description: YafY Location: 1762872-1763769 bp Feature: domain Description: YafY Location: 1 762872-1 763769 bp Feature: gene Location: 1763941-1765365 bp Feature: domain Description: DDE_Tnp_1 Location: 1764361-1765132 bp Feature: domain Description: DDE_Tnp_1 Location: 1 764361 -1 7651 32 bp Feature: gene Location: 1765613-1767007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1765931-1766555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 765931 -1 766555 bp Feature: domain Description: GIIM Note: maturase Location: 1766612-1766831 bp Feature: domain Description: GIIM Note: maturase Location: 1 76661 2-1 766831 bp Feature: gene Location: 1767067-1767219 bp Feature: gene Location: 1767570-1769003 bp Feature: domain Description: COG3666 Location: 1767612-1768080 bp Feature: domain Description: COG3666 Location: 1 76761 2-1 768080 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1768323-1768557 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 768323-1 768557 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1768611-1768965 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 76861 1 -1 768965 bp Feature: gene Location: 2171678-2172874 bp Feature: domain Description: Couple_hipA Location: 2171699-2172029 bp Feature: domain Description: Couple_hipA Location: 21 71 699-21 72029 bp Feature: domain Description: HipA_C Location: 2172164-2172782 bp Feature: domain Description: HipA_C Location: 21 721 64-21 72782 bp Feature: gene Location: 2173069-2174127 bp Feature: gene Location: 2174195-2175589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2174513-2175137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7451 3-21 751 37 bp Feature: domain Description: GIIM Note: maturase Location: 2175191-2175407 bp Feature: domain Description: GIIM Note: maturase Location: 21 751 91 -21 75407 bp Feature: gene Location: 2175649-2175801 bp Feature: gene Location: 2176181-2176585 bp Feature: gene Location: 2185580-2186569 bp Feature: domain Description: SpoT Location: 2186174-2186354 bp Feature: domain Description: SpoT Location: 21 861 74-21 86354 bp Feature: gene Location: 2186788-2187357 bp Feature: domain Description: PgpB Location: 2186878-2187343 bp Feature: domain Description: PgpB Location: 21 86878-21 87343 bp Feature: gene Location: 2187444-2188838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2187762-2188386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 87762-21 88386 bp Feature: domain Description: GIIM Note: maturase Location: 2188443-2188656 bp Feature: domain Description: GIIM Note: maturase Location: 21 88443-21 88656 bp Feature: gene Location: 2188841-2189149 bp Feature: gene Location: 2189458-2190015 bp Feature: domain Description: PAP2_like_4 Location: 2189494-2189977 bp Feature: domain Description: PAP2_like_4 Location: 21 89494-21 89977 bp Feature: gene Location: 2897569-2897961 bp Feature: gene Location: 2898272-2898424 bp Feature: gene Location: 2898484-2899878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898802-2899426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898802-2899426 bp Feature: domain Description: GIIM Note: maturase Location: 2899480-2899696 bp Feature: domain Description: GIIM Note: maturase Location: 2899480-2899696 bp Feature: gene Location: 2899967-2900611 bp Feature: domain Description: DUF4867 Location: 2899976-2900588 bp Feature: domain Description: DUF4867 Location: 2899976-2900588 bp Feature: gene Location: 2900795-2901436 bp Feature: domain Description: HAD_5NT Location: 2900813-2901428 bp Feature: domain Description: HAD_5NT Location: 290081 3-2901 428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), zf-ISL3 (pfam14690), HTH_XRE (smart00530), FlgE (COG1749), COG2929 (Uncharacterized conserved protein, DUF497 family ), COG5304 (Predicted DNA binding protein, CopG/RHH family ), YafY (COG2378), DDE_Tnp_1 (pfam01609)
COG3666 (Transposase ), DDE_Tnp_1_3 (pfam13612), Couple_hipA (pfam13657), HipA_C (pfam07804), SpoT (COG0317), PgpB (COG0671), PAP2_like_4 (cd03395), DUF4867 (pfam16161), HAD_5NT (cd07504)